lowellobservatory / ldtobservertools Goto Github PK

Hello,

I'm getting the following error when running scrub_deveny_pickup. This is using a conda environment installed following the instructions on the obstools readthedocs page:

(obstools) $ scrub_deveny_pickup --proc_dir ../pypeit_1.14.0/Science/ -d *

Processing frame 20231110.0002.fits
Traceback (most recent call last):
File "/opt/miniconda3/envs/obstools/bin/scrub_deveny_pickup", line 8, in
sys.exit(ScrubDevenyPickup.entry_point())
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/opt/miniconda3/envs/obstools/lib/python3.11/site-packages/obstools/utils.py", line 612, in entry_point
sys.exit(cls.main(args))
^^^^^^^^^^^^^^
File "/opt/miniconda3/envs/obstools/lib/python3.11/site-packages/obstools/scrub_deveny_pickup.py", line 1684, in main
iterative_pypeit_clean(
File "/opt/miniconda3/envs/obstools/lib/python3.11/site-packages/obstools/scrub_deveny_pickup.py", line 134, in iterative_pypeit_clean
spec2d_file = [
^
File "/opt/miniconda3/envs/obstools/lib/python3.11/site-packages/obstools/scrub_deveny_pickup.py", line 135, in
next(d.joinpath("Science").glob(f"spec2d_{filename.stem}-*.fits"))
^^^^^^^^^^
AttributeError: 'str' object has no attribute 'joinpath'

The ETC code was ported to python from PHP, and exists in obstools/etc_calc.py. At present, this module only contains the computation functions, but no UI. It would be helpful to create a GUI that replicates the user experience of Phil's PHP page.

The Observer Target List tool is an Eclipse RCP application that lives on dct-obs1 and dct-obs2.

Possibly using pyqt, create a python port of this tool. The source for the RCP application lives in the svn repo on jumar.

In particular, in the new port, allow for the deletion of objects from the loaded target list. This is an observer request for ease of use during a night.

I get the following error when running scrub_deveny_pickup:

Processing frame 20231110.0090.fits
--> FFT-predicted pixel period: 157.2 pix

• No object model extracted. Moving along...
  Fitting sinusoids to each line in the image...
  100%|█████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████| 508/508 [09:04<00:00, 1.07s/row]
  --> Mean fit pixel period: 157.8 pix
  Refitting lines with poor fit in first pass...
  0%| | 0/453 [00:00<?, ?row/s]Traceback (most recent call last):
  File "/opt/miniconda3/envs/obstools/bin/scrub_deveny_pickup", line 8, in
  sys.exit(ScrubDevenyPickup.entry_point())
  ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
  File "/opt/miniconda3/envs/obstools/lib/python3.11/site-packages/obstools/utils.py", line 537, in entry_point
  sys.exit(cls.main(args))
  ^^^^^^^^^^^^^^
  File "/opt/miniconda3/envs/obstools/lib/python3.11/site-packages/obstools/scrub_deveny_pickup.py", line 1684, in main
  iterative_pypeit_clean(
  File "/opt/miniconda3/envs/obstools/lib/python3.11/site-packages/obstools/scrub_deveny_pickup.py", line 221, in iterative_pypeit_clean
  resid_fitc = fit_lines(
  ^^^^^^^^^^
  File "/opt/miniconda3/envs/obstools/lib/python3.11/site-packages/obstools/scrub_deveny_pickup.py", line 733, in fit_lines
  closest_idx = ind_goodrms[np.argmin(np.abs(img_row - ind_goodrms))]
  ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
  File "/opt/miniconda3/envs/obstools/lib/python3.11/site-packages/numpy/core/fromnumeric.py", line 1325, in argmin
  return _wrapfunc(a, 'argmin', axis=axis, out=out, **kwds)
  ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
  File "/opt/miniconda3/envs/obstools/lib/python3.11/site-packages/numpy/core/fromnumeric.py", line 59, in _wrapfunc
  return bound(*args, **kwds)
  ^^^^^^^^^^^^^^^^^^^^
  ValueError: attempt to get argmin of an empty sequence
  0%| | 0/453 [00:00<?, ?row/s]