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devium's Introduction

DEVIUM

Dynamic multivariatE data analysis And VIsUalization PlatforM

Interactive plotting and analysis of multivariate data using Shiny or GTK based GUIs.

Prototypes for some of the analyses implemented in Devium can be viewed in the browser using the Shiny framework.

  • GUI using RGtk2 toolkit implemented with gWidgests

  • Dynamic plotting - base and ggplot2

  • Linked brushing of multiple plots - iplots

  • Network Visualizations - igraph (static, interactive and 3D), Cytoscape (RCytoscape)

  • Analyses - univariate and multivariate

  • Automated report generation - rsweave

  • Data import and linking with MS Excel and Google Spreadsheets

  • Successor to imDEV, including improved interface and capabilities

Installation of GTK GUI

Eventually devium will be installed from R as a package and from alternative repositories where it can be bundled with GTK+ components. For now it can be installed by using the source code in the devium/R directory. Copy and paste the following code in to R to source the necessary files.

#load package from github repo
source("http://pastebin.com/raw.php?i=JVyTrYRD")

#check out some of the functions (accesory objects will be cleaned up)
objects()

#launch GUI (watch R console for messages regarding the downloading of dependancies)
devium.gui()

Note if you don't yet have the GTK+ toolkit installed you need to specify to "Install GTK+" when prompted from the R command line.

devium's People

Contributors

dgrapov avatar

Watchers

Etienne avatar James Cloos avatar

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