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Zi Liu's Projects

pconpy icon pconpy

a python module for generating protein contact maps and distance maps

plip icon plip

Protein-Ligand Interaction Profiler - Analyze and visualize non-covalent protein-ligand interactions in PDB files according to 📝 Adasme et al. (2021), https://doi.org/10.1093/nar/gkab294

plmdca icon plmdca

Pseudo Likelihood Maximization for protein in Julia

pydca icon pydca

mean-field Direct Coupling Analysis

raptorx-contact icon raptorx-contact

Deep residual neural network for protein contact/distance prediction developed by Xu group

rosettafold icon rosettafold

This package contains deep learning models and related scripts for RoseTTAFold

trrosetta icon trrosetta

A package to predict protein inter-residue geometries from sequence data

trrosetta2 icon trrosetta2

Repository for publicly available deep learning models developed in Rosetta community

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