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salmon

🐟 🍣 🍱 Highly-accurate & wicked fast transcript-level quantification from RNA-seq reads using selective alignment

scripts

sgejob

sniffles

Structural variation caller using third generation sequencing

soapbarcode

SOAPBarcode: Assemble standard COI barcode region with two libraries, of which one is full length, another is shotgun. https://doi.org/10.1111/2041-210X.12120

specimen_bioseq_system

The Specimen Bioseq Information Managment System

sqanti2

Private repo for Liz's modified SQANTI

staged-recipes

A place to submit conda recipes before they become fully fledged conda-forge feedstocks

taxonomy_ranks

To get taxonomy ranks information with ETE3 Python3 module (http://etetoolkit.org/)

tracy

Basecalling, alignment, assembly and deconvolution of Sanger Chromatogram trace files

training-material

A collection of Galaxy-related training material

tutorials

tutorials-1

Tutorials on phylogenomic analyses for the ForBio Phylogenomics course

vagrant-timezone

Vagrant plugin that configures the time zone of a virtual machine

vespa

VESPA: Very large-scale Evolutionary and Selective Pressure Analyses

virusfishing

Virusfishing is a virus screening pipeline for 1000 Insect Transcriptome Evolution (1KITE) project to search viruses, construct viral genomes and screen for the expressed virus genes and discover viral splicing patterns. Virusfishing also can be used in other next generation sequencing data.

wdl_dep_resolution

to reuse the existing WDL pipelines

wiki