Comments (1)
While it's not "too hard" to write something that could be piped through to prepend the comment with something to satisfy that constraint, it would be convenient to be able to assign the tag name and/or type by the bwa command line.
Moving too many functionalities into the core increases the maintenance burden. How many is too many is debatable but I think this feature is easy enough to be implemented independent of bwa.
from bwa.
Related Issues (20)
- Fail to read header from fasta input
- When i use bwa for mapping with grch37.p13.fa and hg19.fa,there exists some differences in some regions.
- Build fails with LTO
- [M::bwa_idx_load_from_disk] read 0 ALT contigs
- Indexing large genome failed HOT 3
- no ID within the read group line
- Could anyone tell me the exact meaning of '-5SP'?
- missing `bwa-0.7.18.tar.bz2` for 0.7.18 release HOT 1
- Is there MD tag in output of bwa?
- Set min insert size with -I option. Why do I still get proper pairs with insert size < min insert size?
- bwa alignment of Nanopro sequences to call the transposable elements (TEs)
- How are ambiguity charaters handled in BWA?
- the significance of the -V parameter and XR tag
- BWA and short read mapping
- Continuation after error "paired reads have different names" HOT 1
- How can i obtain all the regions reads hit. (in duplication region) HOT 2
- unexpected high quality scores with chimeric SA alternatives reported HOT 3
- Cannot allocate memory
- discarding reads which contains too many mismatches
Recommend Projects
-
React
A declarative, efficient, and flexible JavaScript library for building user interfaces.
-
Vue.js
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
-
Typescript
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
-
TensorFlow
An Open Source Machine Learning Framework for Everyone
-
Django
The Web framework for perfectionists with deadlines.
-
Laravel
A PHP framework for web artisans
-
D3
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
-
Recommend Topics
-
javascript
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
-
web
Some thing interesting about web. New door for the world.
-
server
A server is a program made to process requests and deliver data to clients.
-
Machine learning
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
-
Visualization
Some thing interesting about visualization, use data art
-
Game
Some thing interesting about game, make everyone happy.
Recommend Org
-
Facebook
We are working to build community through open source technology. NB: members must have two-factor auth.
-
Microsoft
Open source projects and samples from Microsoft.
-
Google
Google ❤️ Open Source for everyone.
-
Alibaba
Alibaba Open Source for everyone
-
D3
Data-Driven Documents codes.
-
Tencent
China tencent open source team.
from bwa.