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Name: Heng Li
Type: User
Company: DFCI & Harvard University
Location: Boston, MA, USA
Blog: http://liheng.org
Name: Heng Li
Type: User
Company: DFCI & Harvard University
Location: Boston, MA, USA
Blog: http://liheng.org
Failed experiment. Archived for a historical record.
A unified array job submitter for LSF, SGE/UGE and Slurm
Experimental bcftools port to support BCF2; DEPRECATED by htslib and htsbox
A simple toolset for BED files (warning: CLI may change before bedtk becomes stable)
High-performance error correction for Illumina resequencing data
Flexible genotype query among 30,000+ samples whole-genome
Barnes-Hut t-SNE
BWK awk modified for biological data
Conda recipes for the bioconda channel.
Benchmarking programming languages/implementations for common tasks in Bioinformatics
For live demo, see http://lh3lh3.users.sourceforge.net/bioseq.shtml
Burrow-Wheeler Aligner for short-read alignment (see minimap2 for long-read alignment)
Minimal docker image for bwa. Not developed any more.
Compute N50/NG50 and auN/auNG
Instructions on how to deploy CentOS 5 virtual machines
A C/C++ library for fast interval overlap queries (with a "bedtools coverage" example)
Fast alignment and preprocessing of chromatin profiles
Concise Run-Length Format for small alphabets; DEPRECATED
Reference-based variant calling pipeline for a pair of phased haplotype assemblies
Model and predict short DNA sequence features with neural networks
Fast implementation of Ukkenon's O(ND) algorithm for computing edit distance
Exact Tandem Repeat Finder (not a TRF replacement)
Fast heuristic ARG construction
A WGS de novo assembler based on the FMD-index for large genomes
Standalone C library for assembling Illumina short reads in small regions
The first fermi paper (Li, 2012)
A declarative, efficient, and flexible JavaScript library for building user interfaces.
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
An Open Source Machine Learning Framework for Everyone
The Web framework for perfectionists with deadlines.
A PHP framework for web artisans
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
Some thing interesting about web. New door for the world.
A server is a program made to process requests and deliver data to clients.
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
Some thing interesting about visualization, use data art
Some thing interesting about game, make everyone happy.
We are working to build community through open source technology. NB: members must have two-factor auth.
Open source projects and samples from Microsoft.
Google ❤️ Open Source for everyone.
Alibaba Open Source for everyone
Data-Driven Documents codes.
China tencent open source team.