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DSL2 translation of DCLS Monroe PE Assembly pipeline

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monroe_pe_assembly-nf's Introduction

DSL2 translation of DCLS Monroe PE Assembly pipeline

Quick start - You need to name all of the params for it to run correctly

nextflow run main.nf --reads <reads_dir> -profile docker --primerSet configs/artic_V3_nCoV-2019.bed --outdir <output_dir>

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