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Montserrat-Fisheries-Assessment

Code for all data prep, analyses, and figures in Montserrat Fisheries Assessment Report

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montserrat-fisheries-assessment's Issues

missing years from length_all.csv

@lennon-thomas Hey lennon did you generate the data file length_all.csv using a script? It looks like the LBAR function wants to be able to call years for the length data and there is no longer a data associated with the lengths.

Would it be easy to add that or should I go ahead and make a new .csv

Any need to keep code that brings in SA data now that we have a clean data set?

# SA data has already been merged in 'all_length.csv'
#
# SA<-read.csv("Sept_2016/Data/SA_individ_lengths.csv")%>%
# mutate(Gear.Type="SA")
# nrow(SA)
# SA<-SA[!(SA$Length<3),] ## remove observations that are <3 cm
# i=8
# for (i in 1:length(sp_id)){
# l<-data%>%
# filter(Species.ID == sp_id[i])%>%
# select(Species.ID,Length,Gear.Type)
#
# s<-SA%>%
# filter(Species.ID == sp_id[i])%>%
# select(Species.ID,Length,Gear.Type)
# t<-rbind(s,l)%>%
# mutate(Data.Type=ifelse(Gear.Type=="SA","Survey","Fishery"))%>%
# write.csv(paste("Sept_2016/Data/",sp_id[i],"_length.csv",sep=""))
# }

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