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neuroproof_minimal

nuggt

NeUroGlancer Ground Truth - annotate cell centers

numcodecs

A Python package providing buffer compression and transformation codecs for use in data storage and communication applications.

oauthenticator

GitHub OAuth + JupyterHub Authenticator = OAuthenticator

path2json

Convert whatever is at the end of a path to JSON

peskeleton

A CellProfiler module that skeletonizes a binary image using the Poisson Equation

pillow

CellProfiler homebrew compatible fork of Pillow (the "friendly" PIL fork)

ping-party

Send and receive UDP packets to and from hosts on a subnet.

puuul

Python thread pool and execution graph

pyemd

A Python wrapper around FastEMD by Ofir Pele

pymaxflow

Python library for creating flow networks and computing the maxflow/mincut (aka graph-cuts for Python)

pytest

The pytest testing tool makes it easy to write small tests, yet scales to support complex functional testing

python-javabridge

Python wrapper for the Java Native Interface

q3dstack

A GUI tool that quantifies the amount of stain in organelles segmented out of a 3D stack.

roibenchmark

Region of interest benchmarking plugin for CellProfiler

scijava-common

A plugin framework and application container with built-in extensibility mechanism.

scikit-image

Image Processing SciKit (Toolbox for SciPy)

shelllnk

A Python package to read Microsoft Shell Link (.lnk) files.

staged-recipes

A place to submit conda recipes before they become fully fledged conda-forge feedstocks

tileimg

Java program to create tiles out of large TIF planes

tps-deformation

Thin plate spline interpolation and deformation.

vigra-ilastik-05

a generic C++ library for image analysis

whathappens

This repository's sole purpose is to do really stupid things with GIT and make sure whatever screwups ensue happen in a repository that I don't care about.

wormsplines

Representation of worms as parameterized splines

zwatershed

Cython functions for fast watersheds and segmentation metrics