PoPoolation2 (Kofler et al., 2011) allows to compare allele frequencies for SNPs between two or more populations and to identify significant differences. PoPoolation2 requires next generation sequencing data of pooled genomic DNA (Pool-Seq). It may be used for measuring differentiation between populations, for genome wide association studies and for experimental evolution.

This repository is a fork of PoPoolation2 from SourceForge to GitHub. The original code was developed by Robert Kofler and ported here with his explicit permission under the BSD 2-Clause "Simplified" License.

At the moment, we here purely cloned the repository, without any modifications to its content. The Wiki contains the tutorials as well, but was not yet adapted from the SourceForge-based svn commands to the GitHub-based git commands.