lawrenson-lab / ovarianrnaseq Goto Github PK

knitr::opts_chunk$set(echo = TRUE)

This document contains workflows, explaining how to perform all analysis described in A Study of High-Grade Serous Ovarian Cancer Origins Implicates the SOX18 Transcription Factor in Tumor Development.

https://lawrenson-lab.github.io/OvarianRNASeq/index.html

Marcos A. S. Fonseca & Felipe Segato.

To install the required packages to run the code below please execute the follwing code.

deps <- c("gelnet","dplyr","gdata","DT", "TxDb.Hsapiens.UCSC.hg19.knownGene", "org.Hs.eg.db", "GenomicRanges")
for(pkg in deps)  if (!pkg %in% installed.packages()) install.packages(pkg, dependencies = TRUE)

• Superenhacers BED peaks.
• Pre-processed RData.
• Raw feature counts text file
• Cistrome BED peaks