Format for MY_CLUSTERS_FILE about ppanggolin HOT 3 CLOSED

Hello,

There is only one gene ID per line. Basically, one line corresponds to one gene, and you'll have as many lines as there are genes in the pangenome.
With a generic example, it would look like this:

family1\tgene1
family1\tgene2
family2\tgene3
family2\tgene4

I've linked an "actual" example to the issue: gene_families.txt

It follows exactly the same format than what is provided in the 'gene_families.tsv' file generated by PPanGGOLiN
I hope this helps !

Adelme

from ppanggolin.

Great! I thought it was one family per line like in:

family1\tgene1, tgene2
family2\tgene3, tgene4

This makes it even easier to import from Anvio

from ppanggolin.

Awesome then !

from ppanggolin.