Comments (3)
Hi @JeanMainguy
That was it! For the record, it was again one of these double-wing motiff proteins (gene mmcQ) the responsible for the error.
I tried removing the non-ASCII characters from the gff3 files and this time it worked with a test subset I was playing with.
Thanks a lot for your prompt help!
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Hi @dmartimarti,
A few of the annotation files would be very helpful in deed to check what's going on here.
Thanks !
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The error seems a bit similar to the one encountered in these issues: #95, #175 and #222. However, here the problem seems to be with the gene name and not the product.
You might try to catch any problematic characters with this grep command on your gbff files:
LC_ALL=C grep -n -P [$'\x80'-$'\xFF'] *.g*ff
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Related Issues (20)
- different results ppanggolin projection with gbff or fasta files HOT 2
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- Clarification about the contents of `gene_to_gene_family.tsv ` from projection HOT 5
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- Getting MSAs for single-copy gene families when duplicates are tolerated HOT 3
- Reading the gbff file error HOT 4
- ppanggolin msa --partition core HOT 6
- error while writing genome annotations HOT 1
- ppanggolin projection: ValueError: The region is already with a different spot. HOT 2
- Add gene name info in the Tile Plot HOT 1
- 'ascii' codec HOT 1
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- Annotation error: gene coordinates exceeding contig length HOT 1
- conda installs old version HOT 2
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