missing annotations in graph about ppanggolin HOT 1 CLOSED

Hi !
Normally all kind of annotations work as long as the format .gbk is followed, i've used annotations from different databases or different annotation tools.

I've had troubles with the identifiers used by the databases/tools though, as they are sometimes not unique (in ncbi genbank notably), but normally we save the ids used in the .gbk file and report them in some of the output files.

If you used the --anno options, your annotations were used, however you are seeing some "internal" unique identifier and not the identifiers from your files.

Which file exactly were you looking at for the graph ?

If it has been well read, the identifier used in your .gbk file is reported in the .json, in the .gexf, and in the projection files that you can get using: ppanggolin write -p pangenome.h5 --projection (it writes one file for each genome)

if you cannot find your identifiers in those files, can you send me one of the .gbk files you used so I can test it ?

from ppanggolin.