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matlab-bdb's Issues

result = feature_calculator.apply execution too long time no result

input_sample = struct('image', imencode(input_image, 'jpg'));
result = feature_calculator.apply(config, input_sample)
[18-Feb-2016 15:12:27] Retrieving 25 nearest neighbors.

Hi, I run the paperdoll demo code, But in the past for a long time to no result,
Is there any solution to fix it ?

platforms are:
64 bit
Ubuntu 14.04
Matlab R2015B

Error occurring in installing paper-doll

Hi, i wanna parse an image using your project paper-doll parsing.
I'm having trouble compiling matlab-bdb in paper-doll parsing on ubunto 14.04 and matlab 2014a
this is the error

/tmp/mex_13959721201434_19551/libbdbmex.o: In function `bdbmex::Record::deserialize_mxarray(std::vector<unsigned char,
std::allocator<unsigned char> > const&, mxArray_tag**)':
libbdbmex.cc:(.text+0x1f9): undefined reference to `mxDeserialize'
/tmp/mex_13959721201434_19551/libbdbmex.o: In function `bdbmex::Record::decompress_mxarray(std::vector<unsigned char,
std::allocator<unsigned char> > const&, mxArray_tag**)':
libbdbmex.cc:(.text+0x2b6): undefined reference to `mxDeserialize'
/tmp/mex_13959721201434_19551/libbdbmex.o: In function `bdbmex::Record::serialize_mxarray(mxArray_tag const*,
std::vector<unsigned char, std::allocator<unsigned char> >*)':
libbdbmex.cc:(.text+0x95a): undefined reference to `mxSerialize'
/tmp/mex_13959721201434_19551/libbdbmex.o: In function `bdbmex::Record::compress_mxarray(mxArray_tag const*,
std::vector<unsigned char, std::allocator<unsigned char> >*)':
libbdbmex.cc:(.text+0xdbe): undefined reference to `mxSerialize'
collect2: error: ld returned 1 exit status

I need a help...

bdb.open: Failed to open a database at data/paperdoll_exemplars.bdb: Invalid argument

I need some help for running paperdoll.

When I run:
load data/paperdoll_pipeline.mat config;
input_image = imread('./fashionista/001.jpg');
input_sample = struct('image', imencode(input_image, 'jpg'));

result = feature_calculator.apply(config, input_sample); %error

The result comes:
[08-Jun-2015 21:12:03] Error:feature_calculator: 1 / 1
Error using mex_function_
Failed to open a database at data/paperdoll_exemplars.bdb: Invalid argument

Error in bdb.open (line 72)
id = mex_function_(mfilename, filename, varargin{:});

Error in softmask_transferer.apply>load_exemplars (line 83)
database_id = bdb.open(config.database_file);

Error in softmask_transferer.apply>process_sample (line 45)
[exemplars, labels] = load_exemplars(config, sample);

Error in softmask_transferer.apply (line 34)
[softmask_transfer, labels] = process_sample(config, sample);

Error in feature_calculator.apply (line 25)
sample = calculators{j}(config{j}, sample, varargin{:}, 'Encode', false);

It seems that these errors come from matlab-bdb.
I finally found that the error message comes from database_id = bdb.open(config.database_file, 'Rdonly', true, 'Create', false);

Is there any solution to fix it ?

While platforms are:
64 bit
ubuntu 12.04
Matlab R2012a

Error occurring in building paper-doll

Hi, i wanna parse an image using your project paper-doll parsing.
I'm having trouble compiling GCO_BuildLib in paper-doll parsing on ubuntu 14.04 and matlab 2015a
this is the error info:

In GCO_BuildLib (line 67)
Warning: You are using gcc version '4.8.4-2ubuntu1~14.04)'. The version of gcc is not supported. The version currently
supported with MEX is '4.7.x'. For a list of currently supported compilers see:
http://www.mathworks.com/support/compilers/current_release.
In GCO_BuildLib (line 67)
Error using mex
/home/boajianmin/research/paperdoll-v1.0/lib/gco-v3.0/src/GCoptimization.cpp:31:23: warning: ‘GCO_CLOCKS_PER_SEC’
initialized and declared ‘extern’ [enabled by default]
extern "C" gcoclock_t GCO_CLOCKS_PER_SEC = CLOCKS_PER_SEC;

                   ^

In file included from /home/boajianmin/research/paperdoll-v1.0/lib/gco-v3.0/src/GCoptimization.h:109:0,
from /home/boajianmin/research/paperdoll-v1.0/lib/gco-v3.0/src/GCoptimization.cpp:4:
/home/boajianmin/research/paperdoll-v1.0/lib/gco-v3.0/src/energy.h: In instantiation of ‘int Energy<captype, tcaptype,
flowtype>::get_var(Energy<captype, tcaptype, flowtype>::Var) [with captype = int; tcaptype = int; flowtype = long long int;
Energy<captype, tcaptype, flowtype>::Var = int]’:
/home/boajianmin/research/paperdoll-v1.0/lib/gco-v3.0/src/GCoptimization.cpp:197:20: required from here
/home/boajianmin/research/paperdoll-v1.0/lib/gco-v3.0/src/energy.h:328:91: error: ‘what_segment’ was not declared in this
scope, and no declarations were found by argument-dependent lookup at the point of instantiation [-fpermissive]
inline int Energy<captype,tcaptype,flowtype>::get_var(Var x) { return (int) what_segment(x); }

                                                                                       ^

/home/boajianmin/research/paperdoll-v1.0/lib/gco-v3.0/src/energy.h:328:91: note: declarations in dependent base ‘Graph<int,
int, long long int>’ are not found by unqualified lookup
/home/boajianmin/research/paperdoll-v1.0/lib/gco-v3.0/src/energy.h:328:91: note: use ‘this->what_segment’ instead
/home/boajianmin/research/paperdoll-v1.0/lib/gco-v3.0/src/energy.h: In instantiation of ‘void Energy<captype, tcaptype,
flowtype>::add_term1(Energy<captype, tcaptype, flowtype>::Var, Energy<captype, tcaptype, flowtype>::Value, Energy<captype,
tcaptype, flowtype>::Value) [with captype = int; tcaptype = int; flowtype = long long int; Energy<captype, tcaptype,
flowtype>::Var = int; Energy<captype, tcaptype, flowtype>::Value = int]’:
/home/boajianmin/research/paperdoll-v1.0/lib/gco-v3.0/src/GCoptimization.cpp:280:22: required from here
/home/boajianmin/research/paperdoll-v1.0/lib/gco-v3.0/src/energy.h:207:22: error: ‘add_tweights’ was not declared in this
scope, and no declarations were found by argument-dependent lookup at the point of instantiation [-fpermissive]
add_tweights(x, B, A);

                  ^

/home/boajianmin/research/paperdoll-v1.0/lib/gco-v3.0/src/energy.h:207:22: note: declarations in dependent base ‘Graph<int,
int, long long int>’ are not found by unqualified lookup
/home/boajianmin/research/paperdoll-v1.0/lib/gco-v3.0/src/energy.h:207:22: note: use ‘this->add_tweights’ instead
/home/boajianmin/research/paperdoll-v1.0/lib/gco-v3.0/src/energy.h: In instantiation of ‘void Energy<captype, tcaptype,
flowtype>::add_term2(Energy<captype, tcaptype, flowtype>::Var, Energy<captype, tcaptype, flowtype>::Var, Energy<captype,
tcaptype, flowtype>::Value, Energy<captype, tcaptype, flowtype>::Value, Energy<captype, tcaptype, flowtype>::Value,
Energy<captype, tcaptype, flowtype>::Value) [with captype = int; tcaptype = int; flowtype = long long int; Energy<captype,
tcaptype, flowtype>::Var = int; Energy<captype, tcaptype, flowtype>::Value = int]’:
/home/boajianmin/research/paperdoll-v1.0/lib/gco-v3.0/src/GCoptimization.cpp:304:42: required from here
/home/boajianmin/research/paperdoll-v1.0/lib/gco-v3.0/src/energy.h:220:22: error: ‘add_tweights’ was not declared in this
scope, and no declarations were found by argument-dependent lookup at the point of instantiation [-fpermissive]
add_tweights(x, D, A);

                  ^

/home/boajianmin/research/paperdoll-v1.0/lib/gco-v3.0/src/energy.h:220:22: note: declarations in dependent base ‘Graph<int,
int, long long int>’ are not found by unqualified lookup
/home/boajianmin/research/paperdoll-v1.0/lib/gco-v3.0/src/energy.h:220:22: note: use ‘this->add_tweights’ instead
/home/boajianmin/research/paperdoll-v1.0/lib/gco-v3.0/src/energy.h:235:23: error: ‘add_tweights’ was not declared in this
scope, and no declarations were found by argument-dependent lookup at the point of instantiation [-fpermissive]
add_tweights(x, 0, B); /* first term */

                   ^

/home/boajianmin/research/paperdoll-v1.0/lib/gco-v3.0/src/energy.h:235:23: note: declarations in dependent base ‘Graph<int,
int, long long int>’ are not found by unqualified lookup
/home/boajianmin/research/paperdoll-v1.0/lib/gco-v3.0/src/energy.h:235:23: note: use ‘this->add_tweights’ instead
/home/boajianmin/research/paperdoll-v1.0/lib/gco-v3.0/src/energy.h:236:24: error: ‘add_tweights’ was not declared in this
scope, and no declarations were found by argument-dependent lookup at the point of instantiation [-fpermissive]
add_tweights(y, 0, -B); /* second term */

                    ^

/home/boajianmin/research/paperdoll-v1.0/lib/gco-v3.0/src/energy.h:236:24: note: declarations in dependent base ‘Graph<int,
int, long long int>’ are not found by unqualified lookup
/home/boajianmin/research/paperdoll-v1.0/lib/gco-v3.0/src/energy.h:236:24: note: use ‘this->add_tweights’ instead
/home/boajianmin/research/paperdoll-v1.0/lib/gco-v3.0/src/energy.h:237:24: error: ‘add_edge’ was not declared in this scope,
and no declarations were found by argument-dependent lookup at the point of instantiation [-fpermissive]
add_edge(x, y, 0, B+C); /* third term */

                    ^

/home/boajianmin/research/paperdoll-v1.0/lib/gco-v3.0/src/energy.h:237:24: note: declarations in dependent base ‘Graph<int,
int, long long int>’ are not found by unqualified lookup
/home/boajianmin/research/paperdoll-v1.0/lib/gco-v3.0/src/energy.h:237:24: note: use ‘this->add_edge’ instead
/home/boajianmin/research/paperdoll-v1.0/lib/gco-v3.0/src/energy.h:245:24: error: ‘add_tweights’ was not declared in this
scope, and no declarations were found by argument-dependent lookup at the point of instantiation [-fpermissive]
add_tweights(x, 0, -C); /* first term */

                    ^

/home/boajianmin/research/paperdoll-v1.0/lib/gco-v3.0/src/energy.h:245:24: note: declarations in dependent base ‘Graph<int,
int, long long int>’ are not found by unqualified lookup
/home/boajianmin/research/paperdoll-v1.0/lib/gco-v3.0/src/energy.h:245:24: note: use ‘this->add_tweights’ instead
/home/boajianmin/research/paperdoll-v1.0/lib/gco-v3.0/src/energy.h:246:23: error: ‘add_tweights’ was not declared in this
scope, and no declarations were found by argument-dependent lookup at the point of instantiation [-fpermissive]
add_tweights(y, 0, C); /* second term */

                   ^

/home/boajianmin/research/paperdoll-v1.0/lib/gco-v3.0/src/energy.h:246:23: note: declarations in dependent base ‘Graph<int,
int, long long int>’ are not found by unqualified lookup
/home/boajianmin/research/paperdoll-v1.0/lib/gco-v3.0/src/energy.h:246:23: note: use ‘this->add_tweights’ instead
/home/boajianmin/research/paperdoll-v1.0/lib/gco-v3.0/src/energy.h:247:24: error: ‘add_edge’ was not declared in this scope,
and no declarations were found by argument-dependent lookup at the point of instantiation [-fpermissive]
add_edge(x, y, B+C, 0); /* third term */

                    ^

/home/boajianmin/research/paperdoll-v1.0/lib/gco-v3.0/src/energy.h:247:24: note: declarations in dependent base ‘Graph<int,
int, long long int>’ are not found by unqualified lookup
/home/boajianmin/research/paperdoll-v1.0/lib/gco-v3.0/src/energy.h:247:24: note: use ‘this->add_edge’ instead
/home/boajianmin/research/paperdoll-v1.0/lib/gco-v3.0/src/energy.h:251:22: error: ‘add_edge’ was not declared in this scope,
and no declarations were found by argument-dependent lookup at the point of instantiation [-fpermissive]
add_edge(x, y, B, C);

                  ^

/home/boajianmin/research/paperdoll-v1.0/lib/gco-v3.0/src/energy.h:251:22: note: declarations in dependent base ‘Graph<int,
int, long long int>’ are not found by unqualified lookup
/home/boajianmin/research/paperdoll-v1.0/lib/gco-v3.0/src/energy.h:251:22: note: use ‘this->add_edge’ instead
In file included from /home/boajianmin/research/paperdoll-v1.0/lib/gco-v3.0/src/GCoptimization.h:110:0,
from /home/boajianmin/research/paperdoll-v1.0/lib/gco-v3.0/src/GCoptimization.cpp:4:
/home/boajianmin/research/paperdoll-v1.0/lib/gco-v3.0/src/graph.cpp: In instantiation of ‘Graph<captype, tcaptype,
flowtype>::Graph(int, int, void ()(char)) [with captype = int; tcaptype = int; flowtype = long long int]’:
/home/boajianmin/research/paperdoll-v1.0/lib/gco-v3.0/src/energy.h:187:189: required from ‘Energy<captype, tcaptype,
flowtype>::Energy(int, int, void ()(char)) [with captype = int; tcaptype = int; flowtype = long long int]’
/home/boajianmin/research/paperdoll-v1.0/lib/gco-v3.0/src/GCoptimization.cpp:1230:33: required from here
/home/boajianmin/research/paperdoll-v1.0/lib/gco-v3.0/src/graph.cpp:21:83: warning: deprecated conversion from string constant
to ‘char_’ [-Wwrite-strings]
if (!nodes || !arcs) { if (error_function) (_error_function)("Not enough memory!"); exit(1); }

                                                                               ^

In file included from /home/boajianmin/research/paperdoll-v1.0/lib/gco-v3.0/src/GCoptimization.h:111:0,
from /home/boajianmin/research/paperdoll-v1.0/lib/gco-v3.0/src/GCoptimization.cpp:4:
/home/boajianmin/research/paperdoll-v1.0/lib/gco-v3.0/src/maxflow.cpp: In instantiation of ‘flowtype Graph<captype, tcaptype,
flowtype>::maxflow(bool, Block) [with captype = int; tcaptype = int; flowtype = long long int]’:
/home/boajianmin/research/paperdoll-v1.0/lib/gco-v3.0/src/energy.h:325:33: required from ‘Energy<captype, tcaptype,
flowtype>::TotalValue Energy<captype, tcaptype, flowtype>::minimize() [with captype = int; tcaptype = int; flowtype = long
long int; Energy<captype, tcaptype, flowtype>::TotalValue = long long int]’
/home/boajianmin/research/paperdoll-v1.0/lib/gco-v3.0/src/GCoptimization.cpp:1237:37: required from here
/home/boajianmin/research/paperdoll-v1.0/lib/gco-v3.0/src/maxflow.cpp:484:145: warning: deprecated conversion from string
constant to ‘char
’ [-Wwrite-strings]
if (maxflow_iteration == 0 && reuse_trees) { if (error_function) (*error_function)("reuse_trees cannot be used in the first
call to maxflow()!"); exit(1); }

                                                                                                                                             ^

/home/boajianmin/research/paperdoll-v1.0/lib/gco-v3.0/src/maxflow.cpp:485:126: warning: deprecated conversion from string
constant to ‘char_’ [-Wwrite-strings]
if (changed_list && !reuse_trees) { if (error_function) (_error_function)("changed_list cannot be used without
reuse_trees!"); exit(1); }

                                                                                                                          ^
                                                                                                                          In
                                                                                                                          file
                                                                                                                          included
                                                                                                                          from
                                                                                                                          /home/boajianmin/research/paperdoll-v1.0/lib/gco-v3.0/src/GCoptimization.h:110:0,

                                                                                                                          from
                                                                                                                          /home/boajianmin/research/paperdoll-v1.0/lib/gco-v3.0/src/GCoptimization.cpp:4:
                                                                                                                          /home/boajianmin/research/paperdoll-v1.0/lib/gco-v3.0/src/graph.cpp:
                                                                                                                          In
                                                                                                                          instantiation
                                                                                                                          of
                                                                                                                          ‘void
                                                                                                                          Graph<captype,
                                                                                                                          tcaptype,
                                                                                                                          flowtype>::reallocate_nodes(int)
                                                                                                                          [with
                                                                                                                          captype
                                                                                                                          =
                                                                                                                          int;
                                                                                                                          tcaptype
                                                                                                                          =
                                                                                                                          int;
                                                                                                                          flowtype
                                                                                                                          =
                                                                                                                          long
                                                                                                                          long
                                                                                                                          int]’:
                                                                                                                          /home/boajianmin/research/paperdoll-v1.0/lib/gco-v3.0/src/graph.h:364:54:
                                                                                                                          required
                                                                                                                          from
                                                                                                                          ‘Graph<captype,
                                                                                                                          tcaptype,
                                                                                                                          flowtype>::node_id
                                                                                                                          Graph<captype,
                                                                                                                          tcaptype,
                                                                                                                          flowtype>::add_node(int)
                                                                                                                          [with
                                                                                                                          captype
                                                                                                                          =
                                                                                                                          int;
                                                                                                                          tcaptype
                                                                                                                          =
                                                                                                                          int;
                                                                                                                          flowtype
                                                                                                                          =
                                                                                                                          long
                                                                                                                          long
                                                                                                                          int;
                                                                                                                          Graph<captype,
                                                                                                                          tcaptype,
                                                                                                                          flowtype>::node_id
                                                                                                                          =
                                                                                                                          int]’
                                                                                                                          /home/boajianmin/research/paperdoll-v1.0/lib/gco-v3.0/src/energy.h:198:30:
                                                                                                                          required
                                                                                                                          from
                                                                                                                          ‘Energy<captype,
                                                                                                                          tcaptype,
                                                                                                                          flowtype>::Var
                                                                                                                          Energy<captype,
                                                                                                                          tcaptype,
                                                                                                                          flowtype>::add_variable(int)
                                                                                                                          [with
                                                                                                                          captype
                                                                                                                          =
                                                                                                                          int;
                                                                                                                          tcaptype
                                                                                                                          =
                                                                                                                          int;
                                                                                                                          flowtype
                                                                                                                          =
                                                                                                                          long
                                                                                                                          long
                                                                                                                          int;
                                                                                                                          Energy<captype,
                                                                                                                          tcaptype,
                                                                                                                          flowtype>::Var
                                                                                                                          =
                                                                                                                          int]’
                                                                                                                          /home/boajianmin/research/paperdoll-v1.0/lib/gco-v3.0/src/GCoptimization.cpp:1140:31:
                                                                                                                          required
                                                                                                                          from
                                                                                                                          here
                                                                                                                          /home/boajianmin/research/paperdoll-v1.0/lib/gco-v3.0/src/graph.cpp:70:74:
                                                                                                                          warning:
                                                                                                                          deprecated
                                                                                                                          conversion
                                                                                                                          from
                                                                                                                          string
                                                                                                                          constant
                                                                                                                          to
                                                                                                                          ‘char*’
                                                                                                                          [-Wwrite-strings]

                                                                                                                          if
                                                                                                                          (!nodes)
                                                                                                                          {
                                                                                                                          if
                                                                                                                          (error_function)
                                                                                                                          (*error_function)("Not
                                                                                                                          enough
                                                                                                                          memory!");
                                                                                                                          exit(1);
                                                                                                                          }

                                                                      ^

In file included from /home/boajianmin/research/paperdoll-v1.0/lib/gco-v3.0/src/graph.h:43:0,
from /home/boajianmin/research/paperdoll-v1.0/lib/gco-v3.0/src/energy.h:77,
from /home/boajianmin/research/paperdoll-v1.0/lib/gco-v3.0/src/GCoptimization.h:109,
from /home/boajianmin/research/paperdoll-v1.0/lib/gco-v3.0/src/GCoptimization.cpp:4:
/home/boajianmin/research/paperdoll-v1.0/lib/gco-v3.0/src/block.h: In instantiation of ‘Type* Block::New(int) [with
Type = int]’:
/home/boajianmin/research/paperdoll-v1.0/lib/gco-v3.0/src/maxflow.cpp:110:36: required from ‘void Graph<captype, tcaptype,
flowtype>::add_to_changed_list(Graph<captype, tcaptype, flowtype>::node_) [with captype = int; tcaptype = int; flowtype = long
long int]’
/home/boajianmin/research/paperdoll-v1.0/lib/gco-v3.0/src/maxflow.cpp:520:27: required from ‘flowtype Graph<captype,
tcaptype, flowtype>::maxflow(bool, Block) [with captype = int; tcaptype = int; flowtype = long long int]’
/home/boajianmin/research/paperdoll-v1.0/lib/gco-v3.0/src/energy.h:325:33: required from ‘Energy<captype, tcaptype,
flowtype>::TotalValue Energy<captype, tcaptype, flowtype>::minimize() [with captype = int; tcaptype = int; flowtype = long
long int; Energy<captype, tcaptype, flowtype>::TotalValue = long long int]’
/home/boajianmin/research/paperdoll-v1.0/lib/gco-v3.0/src/GCoptimization.cpp:1237:37: required from here
/home/boajianmin/research/paperdoll-v1.0/lib/gco-v3.0/src/block.h:124:76: warning: deprecated conversion from string constant
to ‘char
’ [-Wwrite-strings]
if (!next) { if (error_function) (_error_function)("Not enough memory!"); exit(1); }

                                                                        ^

/home/boajianmin/research/paperdoll-v1.0/lib/gco-v3.0/src/block.h: In instantiation of ‘Type* DBlock::New() [with Type
= Graph<int, int, long long int>::nodeptr]’:
/home/boajianmin/research/paperdoll-v1.0/lib/gco-v3.0/src/maxflow.cpp:95:5: required from ‘void Graph<captype, tcaptype,
flowtype>::set_orphan_rear(Graph<captype, tcaptype, flowtype>::node_) [with captype = int; tcaptype = int; flowtype = long
long int]’
/home/boajianmin/research/paperdoll-v1.0/lib/gco-v3.0/src/maxflow.cpp:183:36: required from ‘void Graph<captype, tcaptype,
flowtype>::maxflow_reuse_trees_init() [with captype = int; tcaptype = int; flowtype = long long int]’
/home/boajianmin/research/paperdoll-v1.0/lib/gco-v3.0/src/maxflow.cpp:487:44: required from ‘flowtype Graph<captype,
tcaptype, flowtype>::maxflow(bool, Block) [with captype = int; tcaptype = int; flowtype = long long int]’
/home/boajianmin/research/paperdoll-v1.0/lib/gco-v3.0/src/energy.h:325:33: required from ‘Energy<captype, tcaptype,
flowtype>::TotalValue Energy<captype, tcaptype, flowtype>::minimize() [with captype = int; tcaptype = int; flowtype = long
long int; Energy<captype, tcaptype, flowtype>::TotalValue = long long int]’
/home/boajianmin/research/paperdoll-v1.0/lib/gco-v3.0/src/GCoptimization.cpp:1237:37: required from here
/home/boajianmin/research/paperdoll-v1.0/lib/gco-v3.0/src/block.h:223:76: warning: deprecated conversion from string constant
to ‘char
’ [-Wwrite-strings]
if (!first) { if (error_function) (_error_function)("Not enough memory!"); exit(1); }

Error in GCO_BuildLib (line 67)
eval(mexcmd); % compile and link in one step

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