CVX Toolbox is required to run IntMAP

run-IntMAP.m: Main funciton to run IntMAP algorithm

EM.m: funciton for EM algorithm

RNAseq.mat: processed RNA-seq data for both TSC1-/- and WT

PASseq-KO.mat: processed PAS-seq data for TSC1-/-

PASseq-WT.mat: processed PAS-seq data for WT

mm10-uniqueTranscript.mat: mouse mm10 annotation file

Citation: Chang, Jae-Woong, Wei Zhang, Hsin-Sung Yeh, Meeyeon Park, Chengguo Yao, Yongsheng Shi, Rui Kuang, and Jeongsik Yong. "An integrative model for alternative polyadenylation, IntMAP, delineates mTOR-modulated endoplasmic reticulum stress response." Nucleic acids research (2018).