Comments (3)
I think actually the "sequence" refers to the "cmd" list. This error usually occurs when HMMER is not installed. @DimaMolod sth to consider try-excepting in the future (not now ;-) and printing a more informative message.
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Hi @Clockris, this issue looks like you have a problems with your fasta files. You can check if the two path to fasta files are correct and if files are correctly write in fasta format.
Quentin
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Thanks, apparently the problem was that I did not install the HMMER. I solved directly through conda "conda install bioconda::hmmer".
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Related Issues (20)
- Add dropout
- Running calculate_mpdockq.py with only PDB HOT 1
- run_multimer_jobs issue HOT 5
- Replace this with non-cctbx solution HOT 7
- singularity error HOT 20
- Multiple feature directories HOT 2
- Improve resume predictions HOT 1
- GPU seems not working when run_multimer_jobs.py HOT 5
- Runtime of each prediction HOT 1
- Use DEFINE_list for model_names flag HOT 3
- Clean duplicating functions/ redundant code
- 'ranking_confidence' is not in the result.pkl file after the update HOT 10
- create_indvidual_features.py HOT 2
- Merging individual monomer MSAs for multimer prediction HOT 2
- Problem with MSA for Q6DI86 HOT 2
- rename_colab_search_a3m.py does something unintended HOT 4
- output jupyter notebook is empty HOT 2
- Computing MSA takes long time
- jax error when create_notebook.py is run HOT 4
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