ValueError: operands could not be broadcast together about alphapulldown HOT 4 OPEN

Hi Rafal,

Sorry this error occurred I suppose you created feature pickles using mmseqs2? Previous version of mmseqs2 could lead to this error in some cases so I recently pushed a fix to the main branch. Could you pull the changes from the main branch and rerun the feature creation jobs using updated mmseqs2? Detailed discussions can be found in this issue: #233

Hope it helps.

Yours
Dingquan

from alphapulldown.

Hi,

Just checking if it works now?

Yours
Dingquan

from alphapulldown.

Dear Dingquan,

I encountered this same issue installing AlphaPulldown from pip:

python3 -m pip install alphapulldown==1.0.4

Has this latest fix been propagated to the pip manager?
Alternatively can I have instructions to build Alphapulldown from the GitHub repo?

Many thanks,
Daniel

from alphapulldown.

Hi @dvbrown
Sorry the fixed version hasn't been released to pip yet but I have published a pre-release version which has this issue fixed on testpypi. Would you mind trying it here:

pip uninstall alphapulldown
pip install --index-url https://test.pypi.org/simple/ --extra-index-url https://pypi.org/simple/ alphapulldown==2.0.0b1

I suppose you generated features via mmseqs2? Then I'm afraid you have to rerun it after installing this pre-released version. An official new release will be published to pypi after testing soon this week.

Yours
Dingquan

from alphapulldown.