Comments (2)
source activate AlphaPulldown
create_individual_features.py
--fasta_paths=pcdgG.fasta,sven_proteins.fasta
--data_dir=/local/workdir/sna49/Gallagher_Rotation/AlphaPullDown/proteins
--save_msa_files=False
--output_dir=/local/workdir/sna49/Gallagher_Rotation/AlphaPullDown/proteins/output \
--use_precomputed_msas=False
--max_template_date=<2050-01-01>
--skip_existing=TRUE
--seq_index=$SLURM_ARRAY_TASK_ID
sorry I am really inexperienced with python so I am unsure if there is an error with my code but i am trying to compare my bait protein to a list of proteins and when I run this chunk I get an error message saying: create_individual_features.py: command not found. Any help is appreciated!
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Hi @sophiaaredas ! Seems like smth is wrong with your installation. All AP executable scripts incl. create_individual_features.py should be available in your path after pip install alphapulldown==1.0.4
Could you try deleting your conda environment and try installing it anew?
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Related Issues (20)
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