Shiny webapp of https://mpra.gs.washington.edu/satMutMPRA or https://kircherlab.bihealth.org/satMutMPRA/.

If not already done install miniconda

set up the channels:

conda config --add channels defaults
conda config --add channels bioconda
conda config --add channels conda-forge

Then run conda install mpra-data-access-portal

The latest version on conda is 0.1.8-2 so you can run conda install mpra-data-access-portal=0.1.8-2 to install exactly this version.

now you can run the data portal via the command: mpra-data-access-portal

The default port is 8080 and the default host 0.0.0.0. If you want to change this please change the two variables SHINY_PORT and export SHINY_HOST. E.g.:

export SHINY_PORT=7001
export SHINY_HOST=127.0.0.1

Then run mpra-data-access-portal again.

install dependencies:

R version 4.0.3

R packages:

• dplyr version 1.0.2
• DT version 0.16
• ggplot2 version 3.3.2
• shiny version 1.5.0
• shinytest version 1.4.0
• htmlwidgets version 1.5.1
• readr version 1.4.0
• stringr version 1.4.0
• plotly version 4.9.2.1

Get the latest version via version release on github: https://github.com/kircherlab/MPRA_SaturationMutagenesis/archive/v0.1.8.tar.gz or cloning the repository: https://github.com/kircherlab/MPRA_SaturationMutagenesis/archive/v0.1.8.tar.gz and change to the version tag v0.1.8.

the goto the directory and run the shiny server (here on port 8080 and on host 0.0.0.0, if not alredy defined:

export SHINY_HOST=${SHINY_HOST-0.0.0.0}
export SHINY_PORT=${SHINY_PORT-8080}

Rscript -e "shiny::runApp(port = ${SHINY_PORT}, launch.browser = FALSE, host = '${SHINY_HOST}')"