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ai4elife's Issues

question about test_env.py

HI,
when I run test_env.py with my dataset the result is [2, 128, 256]
could you please help me what is the reason?

IndexError

Hi,when I run train.py with my own dataset, the following errors occur
Traceback (most recent call last):
File "/data/james/lung/src/train.py", line 165, in
main()
File "/data/james/lung/src/train.py", line 135, in main
network_run.train()
File "/data/james/lung/src/run/trainer.py", line 294, in train
batch_output_data = batch_output_data[index_batch]
IndexError: index 25 is out of bounds for axis 0 with size 0

Can you help me solve the problem? Thank you very much!

Adaption of the LFBNet

Hi,
i am a student at the technical university Regensburg in Bavaria, Germany.

I use your pipeline for automated lesion segmentation in PET/CT images for my thesis.

In the LFBNet paper i read, the original use of the LFBNet was not to delineate cancer but to semgent other anatomical structures like inner ear oder prostate.

On your repository i was unable to find how you adapted and especially trained the LFBNet to segment cancer.

I am looking forward to your answer.

Kind regards
Konstanze Hierl

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