khemlalnirmalkar Goto Github PK

metagen-fastqc

Wrapper to clean metagenomic reads

metagenome-metabolome-network_mimenet

metagenomics-workshop

metagenomics-workshop-1

Metagenomics Workshop

metagenomics_summer_school

Course materials for the Genomics Aotearoa Metagenomics Summer School, to be hosted at the University of Auckland in December

metagenomics_workflows

Workflows for metagenomic sequence data processing and analysis.

metamap

Snakemake workflow to map and quantify microbial genomes in metagenomic reads

metamicrobiomer

An R package for analysis of microbiome relative abundance data using zero inflated beta GAMLSS and meta-analysis across microbiome studies using random effects models

metamos

A metagenomic and isolate assembly and analysis pipeline built with AMOS

metaphlan

MetaPhlAn is a computational tool for profiling the composition of microbial communities from metagenomic shotgun sequencing data

metenp

mgnifyr

R package for searching, downloading and analysis of EBI MGnify metagenomics data

miabook

Microbiome Analysis Book

micca

micca - MICrobial Community Analysis

microbeannotator

Pipeline for metabolic annotation of microbial genomes

microbialmetabolites-mime--db

Media Type Database

microbiome-sars_cov2

microbiomebenchmarking

Large-scale Benchmarking of Microbial Multivariable Association Methods

microbiomebestpracticereview

Current Challenges and Best Practice Protocols for Microbiome Analysis using Amplicon and Metagenomic Sequencing

microbiomeseq

An R package for microbial community analysis in an environmental context

microbiomestats

The purpose of this package is to perform Statistical Analysis on the PathoScope generated reports files.

microbiotaprocessworkshop

The workshop of microbiome datasets analysis using MicrobiotaProcess

microdecontamination

An R package for removing contamination from metabarcoding (e.g., microbiome) datasets post-sequencing

microeco_microbiotadataanalysis

An R package for data analysis in microbial community ecology

microviz_downstreamdataanalysis

R package for microbiome data visualization. Uses phyloseq, vegan and tidyverse. See website link for docs with visual examples. Docker image available.

midas

An integrated pipeline for estimating strain-level genomic variation from metagenomic data

mimosa

Model-based Integration of Metabolite Observations and Species Abundances

mimosa2

minto-for-omics-integration

Pipeline for Reproducible and Scalable Integration of Metagenomic and Metatranscriptomic Data

mixomics

Master and devel repo for mixOmics on BioC