khemlalnirmalkar Goto Github PK

2019-19-03-git-workshop

abricate_antibioticresistance

:mag_right: :pill: Mass screening of contigs for antimicrobial and virulence genes

adapters

aldex_bioc

ALDEx_bioc is the working directory for updating bioconductor

amon

Annotation of Metabolite Origin via Networks: A tool for predicting putative metabolite origins for microbes or between microbes and host with or without metabolomics data

amplicon_data_analysis

Collection of notebooks describing the basic analysis workflow for a 16S rRNA gene amplicon sequencing project

amrplusplus_v2

MEGARes and AmrPlusPlus - A comprehensive database of antimicrobial resistance genes and user-friendly pipeline for analysis of high-throughput sequencing data

analysis_of_microbiome_community_data_in_r

This is the source code for the "Analysis of Microbiome Community Data in R" ICPP 2018 workshop. The website is available at: https://grunwaldlab.github.io/analysis_of_microbiome_community_data_in_r/

ancientmicrobiome_goodfigures

ancient oral microbiomes with some good taxonomy figures

ancom

R scripts for Analysis of Composition of Microbiomes (ANCOM).

ancombc

Differential abundance (DA) and correlation analyses for microbial absolute abundance data

ariba

Antimicrobial Resistance Identification By Assembly

asar

Advanced metagenomic Sequence Analysis in R

autism-fmt1

awesome-cheatsheets

👩‍💻👨‍💻 Awesome cheatsheets for popular programming languages, frameworks and development tools. They include everything you should know in one single file.

awesome-shiny-extensions

🐝 Awesome R packages that offer extended UI or server components for the R web framework Shiny

bhattlab_workflows

Computational workflows for metagenomics tasks, by the Bhatt lab

binarena

biobakery

bioBakery: Virtual environment for Huttenhower Tools

biom-format

The Biological Observation Matrix (BIOM) Format Project

biovcnet.github.io

Github Pages template for academic personal websites, forked from mmistakes/minimal-mistakes

birdman-differential-analyses

differential analyses tool from Knight lab

bloodmetabolomeshannonmets

** Blood metabolome predicts gut microbiome α-diversity in humans NatureBiotech Gibbons group**

bracken

Bracken (Bayesian Reestimation of Abundance with KrakEN) is a highly accurate statistical method that computes the abundance of species in DNA sequences from a metagenomics sample.

burrito

A visualization tool for exploratory data analysis of metagenomic data

cdhit

Automatically exported from code.google.com/p/cdhit

circlize

Circular visualization in R

circular-manhattan-plot_rpck

📊 Circular and Rectangular Manhattan Plot

codiversification_leylab

Code and notes for the Ley Lab's codiversification paper.

coexp-website

CoExp website is a web-based tool developed in .NET Core Framework, for querying 109 independent gene co-expression networks from the family of CoExp R packages.