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bars's Issues

size.of.timestep

Remember that size.of.timestep here should be 1. Some parameters are written assuming size.of.timestep = 14, based on PMTCT and SDP papers. Edit the parameter files to make sure the parameterization is consistent with the timesteps for this project.

Better full support for undirected networks

The current C++ network code is enough to work correctly with the undirected network produced from R. However, the support for undirected networks is incomplete in that a search (in hasEdge or removeEdge) for A->B in an undirected network looks only for A->B and not B->A. This isn't a problem because the network edges correspond with those produced by R -- so undirected A->B / B->A is always represented as A->B in both R and C++ and so everything works in this particular instance.

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