kenichi-shimada Goto Github PK

brca_cell_atlas

Data processing and analysis related code associated with the study "A single-cell and spatially resolved atlas of human breast cancers".

collapsibletree

Create Interactive Collapsible Tree Diagrams in R using D3.js

cycifanalyzer

This is a repository of an R package 'CycifAnalyzeR'

cytomapper

Visualization of highly multiplexed imaging data

depmap-analysis

This repostory contains codes for Shimada et al., "A tool for browsing the Cancer Dependency Map reveals functional connections between genes and helps predict the efficacy and selectivity of candidate cancer drugs"

indrops_langenau

Pipeline for processing inDrops sequencing data

minerva_analysis

nakanishi_single_cell

Single cell RNA-seq analysis for Nakanishi et al., Cell, 2019.

nci60-pharmacogenomics

panmyeloid

shinydepmap

A shiny-based web tool for interactive analysis of DepMap data

simple_r_envs

Use a different version of R and libraries (just like renv or conda) for each project

tea

This repository contains codes for Shimada et al., "Analyzing cell-based, small molecule phenotypic screening with polypharmacology to define mechanisms of action"