Name: Karl Broman
Type: User
Company: University of Wisconsin-Madison
Bio: Professor in Dept of Biostatistics & Medical Informatics at UW–Madison. Applied statistician working on statistical genomics.
Location: Madison, Wisconsin, USA
Blog: https://kbroman.org
Karl Broman's Projects
Genetics genome browser
Command-line interface for R/qtl2
R package for converting data among R/qtl2, DOQTL, and R/qtl
Code to build qtl2cran, a mini-CRAN for R/qtl2
Example data for R/qtl2
R/qtl2 module for connecting to genome databases
R/qtl2 package using feather to store genotype probabilities
R/qtl2 package using fst to store genotype probabilities
R/qtl2 module for treatment of genotypes (imputation, probability calculation, map estimation)
Extension of R/qtl2plot to ggplot2
R/qtl2 package for reading/writing QTL objects to/from Mongo databases
Pattern support for R/qtl2
Testing pleiotropy vs. separate QTL in multiparental populations
R/qtl2 module for data visualization
R/qtl2 module for QTL analysis, including genome scans
Shiny app for R/qtl2
R/qtl2 package for reading/writing QTL objects to/from SQLite databases
QTL Bayesian Interval Mapping
R/qtlbook: Datasets for the R/qtl book
R/qtlcharts: An R package for interactive QTL graphics
Code for QTL mapping related figures/illustrations
Re-implementation of R/qtl with clean code, aimed at high-density, high-throughput data
testing of pleiotrophy vs close linkage
Software for testing QTL analysis via simulations
Utilities to view QTL results on the Web
Building R packages
web page