usage: Genetotrans.py [-h] -g GENEPRED -b BED -d INDEX -o OUTPUT

This script aim to transform a single genome position to the transcript position

optional arguments:
  -h, --help            show this help message and exit
  -g GENEPRED, --genepred GENEPRED
                        The genepred format file which cat transform from the gtf file
  -b BED, --bed BED     The bed format file for a single position of the genome ,such as SNP,and must have six columns
  -d INDEX, --index INDEX
                        The transcript fasta index file which you can generate with the samtools
  -o OUTPUT, --output OUTPUT
                        The output filename