Yet Another BETYdb API (for metadata upload)
Gsoc Report : Project Summary
Following commands can be used to initialize the database to be used with YABA development.
docker-compose up -d postgres
docker-compose run --rm bety initialize
docker-compose run --rm bety syncdocker-compose up -d yaba_apiOnce initialization and synchronization of bety database is done,the below command can be directly used to start the app.(Skip the "Setup BETYdb" step)
# Bring up full stack
docker-compose upFollowing endpoints can be used to upload Metadata to respective tables in bety.
Experiments: (to experiments table):
curl -F "fileName=@input_files/experiments.csv" \
http://localhost:5001/yaba/v1/experiments?username=guestuserSites: (to sites table)
curl -F "fileName=@input_files/sites.csv" \
-F "shp_file=@input_files/S8_two_row_polys.shp" \
-F "dbf_file=@input_files/S8_two_row_polys.dbf" \
-F "prj_file=@input_files/S8_two_row_polys.prj" \
-F "shx_file=@input_files/S8_two_row_polys.shx" \
http://localhost:5001/yaba/v1/sitesTreatments: (to treatments table)
curl -F "fileName=@input_files/treatments.csv" \
http://localhost:5001/yaba/v1/treatments?username=guestuserCultivars: (to cultivars table)
curl -F "fileName=@input_files/cultivars.csv" \
http://localhost:5001/yaba/v1/cultivarsCitations: (to citations table)
curl -F "fileName=@input_files/citations.csv" \
http://localhost:5001/yaba/v1/citations?username=guestuserExperiments_sites: (to experiments_sites table)
curl -F "fileName=@input_files/experiments_sites.csv" \
http://localhost:5001/yaba/v1/experiments_sitesExperiments_treatments: (to experiments_treatments table)
curl -F "fileName=@input_files/experiments_treatments.csv" \
http://localhost:5001/yaba/v1/experiments_treatmentsSites_cultivars: (to sites_cultivars table)
curl -F "fileName=@input_files/sites_cultivars.csv" \
http://localhost:5001/yaba/v1/sites_cultivarsCitations_sites: (to citations_sites table)
curl -F "fileName=@input_files/citations_sites.csv" \
http://localhost:5001/yaba/v1/citations_sitesFollowing endpoints can be used to upload Metadata to respective tables in bety.
Experiments: (to experiments table):
curl -F "fileName=@input_files/experiments.csv" \
http://localhost:6001/experiments?username=guestuserSites: (to sites table)
curl -F "fileName=@input_files/sites.csv" \
-F "shp_file=@input_files/S8_two_row_polys.shp" \
-F "dbf_file=@input_files/S8_two_row_polys.dbf" \
-F "prj_file=@input_files/S8_two_row_polys.prj" \
-F "shx_file=@input_files/S8_two_row_polys.shx" \
http://localhost:6001/sitesTreatments: (to treatments table)
curl -F "fileName=@input_files/treatments.csv" \
http://localhost:6001/treatments?username=guestuserCultivars: (to cultivars table)
curl -F "fileName=@input_files/cultivars.csv" \
http://localhost:6001/cultivarsCitations: (to citations table)
curl -F "fileName=@input_files/citations.csv" \
http://localhost:6001/citations?username=guestuserExperiments_sites: (to experiments_sites table)
curl -F "fileName=@input_files/experiments_sites.csv" \
http://localhost:6001/experiments_sitesExperiments_treatments: (to experiments_treatments table)
curl -F "fileName=@input_files/experiments_treatments.csv" \
http://localhost:6001/experiments_treatmentsSites_cultivars: (to sites_cultivars table)
curl -F "fileName=@input_files/sites_cultivars.csv" \
http://localhost:6001/sites_cultivarsCitations_sites: (to citations_sites table)
curl -F "fileName=@input_files/citations_sites.csv" \
http://localhost:6001/citations_sites
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