Comments (4)
jeanpauphilet
commented on August 18, 2024
2
Hi,
I had a similar issue recently.
It is likely due to the fact that one of the programs (R or Julia) is not built for the right architecture.
If you are using an M1 Max MacBook Pro, your architecture should be ARM (aarch64 or arm64).
You can check the architecture used by Julia by displaying the value of the Sys.ARCH constant (you should get :aarch64).
You can check the architecture used by R with the R.version command.
Then, you should reinstall any program (R or Julia) that is currently not built for the right architecture, by making sure you download the right installation files.
from rcall.jl.
palday
commented on August 18, 2024
I think @jeanpauphilet is exactly right.
from rcall.jl.
luboshanus
commented on August 18, 2024
I still obtain same error as above on M3 MacBook and Julia LTS 1.6.7.
(@v1.6) pkg> st
Status `~/.julia/environments/v1.6/Project.toml`
...
[6f49c342] RCall v0.14.1It works with Julia 1.8.5 and 1.10.2.
But the error is:
(@v1.6) pkg> build
Building Conda ─→ `~/.julia/scratchspaces/44cfe95a-1eb2-52ea-b672-e2afdf69b78f/51cab8e982c5b598eea9c8ceaced4b58d9dd37c9/build.log`
Building IJulia → `~/.julia/scratchspaces/44cfe95a-1eb2-52ea-b672-e2afdf69b78f/47ac8cc196b81001a711f4b2c12c97372338f00c/build.log`
Building RCall ─→ `~/.julia/scratchspaces/44cfe95a-1eb2-52ea-b672-e2afdf69b78f/846b2aab2d312fda5e7b099fc217c661e8fae27e/build.log`
ERROR: Error building `RCall`:
ERROR: could not load library "/Library/Frameworks/R.framework/Resources/lib/libR.dylib"
dlopen(/Library/Frameworks/R.framework/Resources/lib/libR.dylib, 0x0001): tried: '/Library/Frameworks/R.framework/Resources/lib/libR.dylib' (mach-o file, but is an incompatible architecture (have 'arm64', need 'x86_64')), '/System/Volumes/Preboot/Cryptexes/OS/Library/Frameworks/R.framework/Resources/lib/libR.dylib' (no such file), '/Library/Frameworks/R.framework/Resources/lib/libR.dylib' (mach-o file, but is an incompatible architecture (have 'arm64', need 'x86_64')), '/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/lib/libR.dylib' (mach-o file, but is an incompatible architecture (have 'arm64', need 'x86_64')), '/System/Volumes/Preboot/Cryptexes/OS/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/lib/libR.dylib' (no such file), '/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/lib/libR.dylib' (mach-o file, but is an incompatible architecture (have 'arm64', need 'x86_64'))
ERROR: LoadError: Try adding /Library/Frameworks/R.framework/Resources/lib to the "LD_LIBRARY_PATH" environmental variable and restarting Julia.
Stacktrace:
[1] error(s::String)
@ Base ./error.jl:33
[2] validate_libR(libR::String)
@ Main ~/.julia/packages/RCall/dDAVd/deps/setup.jl:26
[3] top-level scope
@ ~/.julia/packages/RCall/dDAVd/deps/build.jl:20
[4] include(fname::String)
@ Base.MainInclude ./client.jl:444
[5] top-level scope
@ none:5
in expression starting at /Users/luboshanus/.julia/packages/RCall/dDAVd/deps/build.jl:11
caused by: could not load library "/Library/Frameworks/R.framework/Resources/lib/libR.dylib"
dlopen(/Library/Frameworks/R.framework/Resources/lib/libR.dylib, 0x0001): tried: '/Library/Frameworks/R.framework/Resources/lib/libR.dylib' (mach-o file, but is an incompatible architecture (have 'arm64', need 'x86_64')), '/System/Volumes/Preboot/Cryptexes/OS/Library/Frameworks/R.framework/Resources/lib/libR.dylib' (no such file), '/Library/Frameworks/R.framework/Resources/lib/libR.dylib' (mach-o file, but is an incompatible architecture (have 'arm64', need 'x86_64')), '/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/lib/libR.dylib' (mach-o file, but is an incompatible architecture (have 'arm64', need 'x86_64')), '/System/Volumes/Preboot/Cryptexes/OS/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/lib/libR.dylib' (no such file), '/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/lib/libR.dylib' (mach-o file, but is an incompatible architecture (have 'arm64', need 'x86_64'))
Stacktrace:
[1] dlopen(s::String, flags::UInt32; throw_error::Bool)
@ Base.Libc.Libdl ./libdl.jl:114
[2] dlopen (repeats 2 times)
@ ./libdl.jl:114 [inlined]
[3] validate_libR(libR::String)
@ Main ~/.julia/packages/RCall/dDAVd/deps/setup.jl:16
[4] top-level scope
@ ~/.julia/packages/RCall/dDAVd/deps/build.jl:20
[5] include(fname::String)
@ Base.MainInclude ./client.jl:444
[6] top-level scope
@ none:5
from rcall.jl.
palday
commented on August 18, 2024
@luboshanus Julia 1.6 has poor support for Apple silicon -- I suspect you're actually running an x86-64 binary via Rosetta, which would be binary incompatible with linking to a native R build.
from rcall.jl.
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from rcall.jl.