The peptide-map from josephsbrown1

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How to deal with sequences of unequal length?

This is awesome work.
I am trying to encode some peptides and generate the plots using
Make_Map_Encode_Peptide_and_Dim_Reduce.ipynb
When I tried with my sequences I found that there shouldn't be any duplicate sequences in the input. So, adding

df.drop_duplicates(subset=['Peptide'])

is probably a good idea.
Now, everything works if I trim the sequences to the same length before processing, but if the length of the sequences is different, I get

File ~/anaconda3/envs/EsmFold-jupyter/lib/python3.9/site-packages/pandas/core/internals/blocks.py:1428, in Block.setitem(self, indexer, value, using_cow)
   1425     if isinstance(casted, np.ndarray) and casted.ndim == 1 and len(casted) == 1:
   1426         # NumPy 1.25 deprecation: https://github.com/numpy/numpy/pull/10615
   1427         casted = casted[0, ...]
-> 1428     values[indexer] = casted
   1429 return self

ValueError: could not broadcast input array from shape (32,) into shape (34,)

Have you seen this error?
I would be really grateful for any suggestions.
Amin.

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