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openheart-project's Introduction

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Welcome!

Thank you for visiting the OpenHeart Project repository on GitHub.

This document (the README.md file) will give you some information about the project.

However, if you already know about OpenHeart and are here to contribute, feel free to jump straigth to the Issues and / or Contributor Guidelines.

Background

Cardiovascular diseases (CVD) are attributed as the leading cause of death throughout the developed world, accounting for 29% of all deaths in Australia in 2014. CVD often leads to heart failure (HF) and evidence from current literature suggests that HF is the fastest growing CVD globally. The use of mechanical circulatory support (MCS) in the management of acute and chronic HF is continuously expanding with more than 20k devices implanted worldwide by 2016. However, the research field of MCS consists of researchers from multiple international research laboratories and universities spread around the globe and research is often undertaken in isolation within each laboratory, limiting inter-laboratory collaboration and thus the full potential of the field of MCS.

It has been reported that currently an estimated 85% of all global research resources are wasted due to false and non-reproducible results or slow and potentially inefficient translation of knowledge into useful applications. Risk factors for high rates of false results are: flexibility in study designs, definitions and analyses and a lack of collaboration between researchers. Adoption of large-scale collaborative research with a strong replication culture has been shown to be successful in several biomedical fields (e.g. genetic and molecular epidemiology). Sharing of data, protocols, materials and other resources has been promoted in other fields, creating a foundation for reproducible research practices. It has also been shown that improvements in study design standards can improve the reliability of research results, while improved training and continuing education of researchers is also important. There is a clear need and untapped potential for improved collaborative efforts and subsequent improvement of research quality and outcomes within the field of MCS.

Aims and Objectives

The OpenHeart Project is an open-source research project which aims to improve research practices within the field of MCS and ultimately improve outcomes and quality of life for heart failure patients around the globe. Key objectives of the OpenHeart Project are:

  • Improved collaboration, standardization and sharing of existing knowledge
  • Improved training and education
  • Development of new and improved solutions for mechanical circulatory support

To promote improved collaboration and standardization between researchers and laboratories within the field of Mechanical Circulatory Support (MCS) an open-source research platform has been developed. Within this platform we can leverage the existing resources and expertise within ISMCS to develop new and improved solutions for mechanical circulatory support (MCS) of heart failure patients to improve patient outcomes and quality of life. Furthermore the OpenHeart Project seeks to improve education and training of emerging researcher within the field of MCS through the development of online curricula and training tools, which will be available to students for free around the globe.

OpenHeart Structure

The below infographic visualizes the current OpenHeart Project structure and how the different proposed entities interact with each other. Further information can be found below the infographic.

openheart structure graphic

Key entities of the OpenHeart platform are the OpenHeart website, data repositories, MCS Wiki and team collaboration tools. The OpenHeart website will be the point of first contact for researchers interested in the project. The website will provide information about the background, aims and progress of the OpenHeart Project. Through the website researcher will be able to sign up to participate in the project.

Team collaboration tools, MCS wiki and data repository will be implemented using the software solutions Stride, Confluence and Bitbucket (Atlassian, Sydney, Australia). Atlassian offers free user licenses to open-source research projects, thus making the participation in the OpenHeart Project free for everyone. Embedded networking capabilities will provide the opportunity to propose collaborations and projects between participating laboratories and universities as well as to raise and discuss current research questions. Furthermore, a discussion forum can be used to discuss exchange and collaborative use of equipment and resources.

An MCS wiki will be implemented as a knowledge base especially for PhD students and early career researchers. Within the wiki the most common terms in the field, equations and information can be defined. Collating this background information in one space under the guidance and approval of senior researchers in the field of MCS will improve the education of PhD students and emerging researchers in the field of MCS around the globe. Furthermore, standardized protocols of study designs, experimental set-ups, data acquisition and data analyses will be developed within the OpenHeart Project and presented within the MCS wiki. The networking capabilities and MCS wiki are the two key entities to achieve improved collaboration and standardization within the field of MCS and improved education and training of emerging researcher. Subsequently this will improve the overall research quality and outcomes within the field of MCS, while saving research time and subsequently research money.

The key entity of the OpenHeart platform to develop improved solutions for MCS will be the open-source data repository. Within this repository researchers can upload and share their data with the research community, thus leveraging the existing expertise to develop new and improved solutions for MCS. Data will include (but will not be limited to) 3D design files to develop new and improved devices, code for improved patient monitoring and control systems and experimental results. Collaborators will be able to freely upload and download files and comment directly to uploaded content. Build in version control within Atlassian’s Bitbucket software allows for efficient tracking of development progress for each device and component of devices. All information within the OpenHeart repository will be licensed under a common creative license (CC BY V4.0). Under this license it will be free to share, copy and redistribute the material in any medium or format as well as free to adapt, remix, transform and build upon the material for any purpose.

Who are we?

The OpenHeart Project was initiated by Prof Geoff Tansley (Griffith University) and developed by Dr Jo Pauls (The University of Queensland in collaboration with Ms Amanda Miotto (Griffith University) and multidisciplinary colleagues at The Prince Charles Hospital – Critical Care Research Group, Innovative Cardiovascular Engineering and Technology Laboratory (ICETLAB), The University of Queensland and Griffith University. In order to gain worldwide support for the OpenHeart Project collaboration with the International Society of Mechanical Circulatory Support (ISMCS) was agreed upon and a platform prototype was presented at last year’s annual ISMCS conference in Tucson, USA. Since then multiple research laboratories from around the globe signed up to participate on the OpenHeart Project.

What do we need?

You! In whatever way you can help.

We need expertise in webdesign, user experience design, documentation, video tutorial creation and animation to improve upon the current state of the website and existing documentation.

How to Contribute ?!?

Information on how to best contribute at this stage of the project can be found in the Contributor Guidelines

Contact us

If you want to report a problem or suggest an enhancement we'd love for you to open an issue at this github repository. That way we can get right on it. You can also contact the OpenHeart Project by email (contact AT openheartproject DOT org).

Thank you

Thank you so much for visiting the OpenHeart Project and we do hope that you'll join us on our quest to improve the our research community and ultimately research outcomes in mechanical circulatory support.

Code of Conduct

The OpenHeart Project adheres to a Code of Conduct

openheart-project's People

Contributors

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Stargazers

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Watchers

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Forkers

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openheart-project's Issues

OpenHeart Project - Data Repositories

Identify Data to be Shared

One of the key objectives of the OpenHeart Project is to leverage the existing resources, data and expertise within the field of mechanical circulatory support through open data sharing. Especially we aim to give a second life to PhD projects that would otherwise have languished in university archives. Information to be shared may include (but is not limited to): numerical and CFD models for in silico experiments, designs of mock circulation loops and pump test rigs for in vitro experiments, code for improved patient monitoring and physiological control systems, unsuccessful ideas, and raw data that could not be included in a peer-reviewed publication.

An overview of repositories and topics can be found within Confluence pages (https://openheartproject.atlassian.net/wiki/spaces/OR/overview).
And the repositories are being implemented within Bitbucket (https://bitbucket.org/openheartproject-team/profile/repositories).
Be aware, that you have to be an OpenHeart community member to see the data repositories. If you are not a member yet, but want to be, please visit www.openheartproject.org and fill out the join form.

Information on how to create and work within a data repository is attached here.

  • Think about the work you have done previously and what would be useful information to share with the community. Then go ahead and start creating a data repository.
  • Is there any data that would be useful for your research and you think it would be great if someone would share that kind of information? Let us know, either through a comment here or send us an email ([email protected])

rename CONTRIBUTOR GUIDELINES.md

HI @JoPauls!

Great work on your repo. One change I'd recommend is renaming CONTRIBUTOR GUIDELINES.md to CONTRIBUTING.md. This way, github knows you have contributor guidelines and will point newcomers to that automagically 😃

Animations - Heart / Heart Failure / Heart Pump

Animations - Heart / Heart Failure / Heart Pump

One of the key objectives of the OpenHeart Project is to improve education and training of students and emerging researchers within the field of mechanical circulatory.

We are planning to implement animations of the heart, heart failure conditions and heart pump as an educational tool (e.g. through collaboration with BioDigital).

Do you have experience in developing animations, widget or app development than your input is needed!

Get to know OpenHeart Project within Atlassian Entities

Get to know OpenHeart Project Entities

If you are not an OpenHeart community member yet, but you would like to join, please visit www.openheartproject.org and fill out the join form.
If you are already a community member and you would like to learn more about the different entities, this is your issue.

Key entities of the OpenHeart platform are the website, data repositories, MCS Wiki and networking capabilities.

Networking capabilities, MCS wiki and data repositories are implemented using the software solutions Stride, Confluence and Bitbucket (Atlassian Corporation Plc, Sydney, Australia). Atlassian offers free user licenses to open-source research projects, thus making the participation in the OpenHeart Project free for everyone.

Networking - Stride

Stride is a team collaboration tool and can be used to chat or video chat with other team members or to create discussion rooms. If you are new, feel free to visit the 'Welcome and Introductions' room and introduce yourself to the community.

Data Repositories - Bitbucket

Data will be shared through open-source data repositories hosted within Bitbucket, which allows researchers to create unlimited repositories. If you are new to Bitbucket, we provide
documentation to help you create your first repository. If you have trouble following the instructions, please let us know either via comment to this issue or email ([email protected]).

MCS Wiki - Confluence

The MCS Wiki has been implemented through Confluence pages. You will find information on how to create Confluence pages within the documentation shared in this issue. If you have trouble following the instructions, please let us know either via comment to this issue or email ([email protected]).

Funding Opportunities

Funding Opportunities

The OpenHeart Project depends on external funding and donations in the long-term.
If you know of any funding / grant opportunities the OpenHeart Project may be eligible for, please leave a comment or send an email to [email protected].
Of course, if you want to help the OpenHeart Project through a direct donation, simply visit The Common Good.
Your help is greatly appreciated.

OpenHeart Project - Wiki

Contribute to the Mechanical Circulatory Support Wiki

One of the key objectives of the OpenHeart Project is to improve education and training within the field of mechanical circulatory support (MCS). We created the foundation for an MCS Wiki implemented within Confluence as a knowledge base especially for PhD candidates and early career researchers.

We need your input to grow the MCS Wiki. Think about your area of expertise and consider creating an MCS Wiki entry. Information on how to create a Confluence page can be found here.
Be aware that you need to be an OpenHeart community member to be able to create Confluence pages. If you are not a member yet, visit www.openheartproject.org and fill out the join form.

Interactive World Maps - Stats - Educational Tool

Interactive World Maps - Statistics - Educational Tool

One of the key objectives of the OpenHeart Project is to improve education and training of students and emerging researchers within the field of mechanical circulatory.
To provide an improved overview of heart failure prevalence and the use of mechanical circulatory support around the globe we are developing interactive world maps to provide statistical information.
A rough prototype of the maps can be seen here for visualization purposes.

Initially two maps will be implemented (HF prevalence and MCS), however further maps can be implemented as needed (e.g. Europe including individual countries).

To collect statistical information a google document OpenHeart Interactive World Maps - Stats was created.

Your input is needed to collate information that we can then implement within the maps.
Feel free suggest further categories that should be covered or leave other feedback, ideas in the comment section.

Video Tutorials

Video Tutorials

We have created written documentation on how to create data repositories and MCS Wiki entries.
However, it might be useful to create additional short video tutorials.

Do you have experience in creating video tutorials (e.g. through screen capturing software) than we would like to hear from you.

Review our Documentation

Review our 'How To' Documentation

We created 'How To' documentation to teach new community members how to create and work within data repositories within Bitbucket and how to create and edit entries in the MCS Wiki.

Even though the documentation has been tested by other members of the community, we might have missed something.
Please go through the documentation and help us identify errors or room for improvement by leaving a comment to this issue.

OpenHeart Project Website

Improving the OpenHeart website:

The OpenHeart Project website will be improved and we would like to get your feedback.
Please visit www.openheartproject.org and let us know:

  • General feedback on the website.
  • What kind of information do you think should be added?
  • Ideas on design improvements.

Feel free to leave your feedback and input as a comment to this issue or send an email to [email protected].

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