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followers: 78.0 following: 38.0 repos: 94.0 gists: 6.0

Name: jinyuan sun

Type: User

Company: Institute of Microbiology, CAS

Location: Beijing

Towards Computational Biology

I am currently trying to dive into exploiting deep learning to tackle complex biological problems and eventually give people better lives. This may be a long shot, but I will take the odds.

PymolFold⚗️
- Fold and design your protein in pymol.
- webapp
ChatMol
- ChatGPT in Pymol.
- Offcial Website
- Online chatbot
DDGScan🔥
- Score, analysis and visualization of protein mutation(s).
- GRPAE-WEB
CMPP🧬
- Fungal genome analysis.
- webapp

If you would like to discuss anything about applying deep learning to biological problems, feel free to get in touch with me: [email protected].
Publications.

jinyuan sun's Projects

eggnog-mapper

Fast genome-wide functional annotation through orthology assignment

enz-pred

evo

DNA foundation modeling from molecular to genome scale

evolocity

Evolutionary velocity with protein language models

explore_motif_diversity

fast-pdb-tools

A PDB tool designed to be light and faster.

funcliblocal

Rosetta Funclib

gemma-chinese

Finetune Gemma for Chinese

get-sequence-fasta-by-uniprot-id

gofeat

GO FEAT: a rapid web-based functional annotation tool for genomic and transcriptomic data

gpse

Genome scAle Substrate Specific Enzyme pRediction

grade_if

Graph Denoising Diffusion for Inverse Protein Folding(NeurIPS 2023)

gvp

Geometric Vector Perceptron --- a rotation-equivariant GNN for learning from biomolecular structure

gvp-pytorch

Geometric Vector Perceptrons --- a rotation-equivariant GNN for learning from biomolecular structure

hello-world

Night gathers, and now my coding begins.I pledge my life and honor to codes, for this night, and all the nights to come.

jinyuansun

jinyuansun.github.io

lab-gui-tools

GUI tools for my lab

linux-tutorial

Linux Tutorial

linuxdesktopdocs

Documentation for Linux Desktops

localpdb

Python package to manage protein structures and their annotations

maker-docker

Docker image as base for building full MAKER image

marbgc

to find BGC in marine microbes

minglab_protocol

Protocol of computational and bioinformatic methods for bio-catalysis (re)design or discovery

monn

MONN: a Multi-Objective Neural Network for Predicting Pairwise Non-Covalent Interactions and Binding Affinities between Compounds and Proteins

mpxv_research

Researches about Monkeypox virus

msaddg

mutation-stability-data

my_bio_script

my bioscript

omegafold

OmegaFold Release Code

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