jingshuw / sctransfer Goto Github PK
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License: MIT License
Supporting Python package for SAVER-X
License: MIT License
Hi, can you provide some instructions on pre-training with sctransfer? Thanks!
Hi;
I get an error for tensorflow when installing sctransfer (see below). I manually installed tensoflow with
pip3 install tensorflow==2.0.0a0
which is among the versions listed in the error message. But the error persists. Any advice would be appreciated!
Thanks
Hamid
$ pip3 install sctransfer
Collecting sctransfer
Using cached https://files.pythonhosted.org/packages/22/12/5bfdc305aaa014c30d509588490583f036d80331c728463bc132bdcedae7/sctransfer-0.0.9-py3-none-any.whl
Collecting h5py (from sctransfer)
Using cached https://files.pythonhosted.org/packages/60/06/cafdd44889200e5438b897388f3075b52a8ef01f28a17366d91de0fa2d05/h5py-2.10.0-cp36-cp36m-manylinux1_x86_64.whl
Collecting numpy>=1.7 (from sctransfer)
Using cached https://files.pythonhosted.org/packages/07/08/a549ba8b061005bb629b76adc000f3caaaf881028b963c2e18f811c6edc1/numpy-1.18.2-cp36-cp36m-manylinux1_x86_64.whl
Collecting scikit-learn (from sctransfer)
Downloading https://files.pythonhosted.org/packages/5e/d8/312e03adf4c78663e17d802fe2440072376fee46cada1404f1727ed77a32/scikit_learn-0.22.2.post1-cp36-cp36m-manylinux1_x86_64.whl (7.1MB)
100% |████████████████████████████████| 7.1MB 301kB/s
Collecting anndata (from sctransfer)
Downloading https://files.pythonhosted.org/packages/5b/c8/5c594a95ba293433dfe1cf188075ccbabe495bf2d291be744974aca85ffc/anndata-0.7.1-py3-none-any.whl (97kB)
100% |████████████████████████████████| 102kB 9.5MB/s
Collecting keras>=2.2.2 (from sctransfer)
Using cached https://files.pythonhosted.org/packages/ad/fd/6bfe87920d7f4fd475acd28500a42482b6b84479832bdc0fe9e589a60ceb/Keras-2.3.1-py2.py3-none-any.whl
Collecting six>=1.10.0 (from sctransfer)
Using cached https://files.pythonhosted.org/packages/65/eb/1f97cb97bfc2390a276969c6fae16075da282f5058082d4cb10c6c5c1dba/six-1.14.0-py2.py3-none-any.whl
Collecting scanpy (from sctransfer)
Using cached https://files.pythonhosted.org/packages/e8/e0/6772a65571401bfc9c28be86cbff8aab0a33d82ae9dd53f238acbaa693bc/scanpy-1.4.6-py3-none-any.whl
Collecting pandas (from sctransfer)
Using cached https://files.pythonhosted.org/packages/bb/71/8f53bdbcbc67c912b888b40def255767e475402e9df64050019149b1a943/pandas-1.0.3-cp36-cp36m-manylinux1_x86_64.whl
Collecting tensorflow>=2.0.0 (from sctransfer)
Could not find a version that satisfies the requirement tensorflow>=2.0.0 (from sctransfer) (from versions: 0.12.1, 1.0.0, 1.0.1, 1.1.0rc0, 1.1.0rc1, 1.1.0rc2, 1.1.0, 1.2.0rc0, 1.2.0rc1, 1.2.0rc2, 1.2.0, 1.2.1, 1.3.0rc0, 1.3.0rc1, 1.3.0rc2, 1.3.0, 1.4.0rc0, 1.4.0rc1, 1.4.0, 1.4.1, 1.5.0rc0, 1.5.0rc1, 1.5.0, 1.5.1, 1.6.0rc0, 1.6.0rc1, 1.6.0, 1.7.0rc0, 1.7.0rc1, 1.7.0, 1.7.1, 1.8.0rc0, 1.8.0rc1, 1.8.0, 1.9.0rc0, 1.9.0rc1, 1.9.0rc2, 1.9.0, 1.10.0rc0, 1.10.0rc1, 1.10.0, 1.10.1, 1.11.0rc0, 1.11.0rc1, 1.11.0rc2, 1.11.0, 1.12.0rc0, 1.12.0rc1, 1.12.0rc2, 1.12.0, 1.12.2, 1.12.3, 1.13.0rc0, 1.13.0rc1, 1.13.0rc2, 1.13.1, 1.13.2, 1.14.0rc0, 1.14.0rc1, 1.14.0, 2.0.0a0, 2.0.0b0, 2.0.0b1)
No matching distribution found for tensorflow>=2.0.0 (from sctransfer)
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