github page | source code

With breakthroughs in Next Generation Sequencing (NGS), we are collecting vast amounts of data that will be analyzed for screening interesting targets. The details of these data reveal basic information in genome-wide such as gene expression profiles, DNA-protein interactions, DNA-DNA interactions and chromatin structures, or may lead us to major discoveries like gene-regeneration associations. This workshop is designed for postdoc, graduated students to get the basic and advanced bioinformatics skills used in RNA-seq and DNA-seq data analysis. We will focus on the fundamentals of sequence analysis and try to let every attendance run the pipeline with sample data in order to make researchers confident in sequencing data analysis, understanding the results and presenting the data by themselves.

library(BiocManager)
install("jianhong/workshop2020", build_vignettes = TRUE)

• ATACseqQC
• ChIPpeakAnno
• motifStack
• trackViewer

• ATACseqQC
• ChIPpeakAnno
• motifStack
• ribosomeProfilingQC
• trackViewer