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icgctoolsr

idmap1

idmap2

idmap3

igd

A high-performance search engine for large-scale genomic interval datasets

igmdr

An integrative database for investigating genetic model of drug response in cancer

immunarch

🧬 Immunarch by ImmunoMind: R Package for Fast and Painless Exploration of Single-cell and Bulk T-cell/Antibody Immune Repertoires

immune-subtype-clustering

This repo contains the code necessary to reproduce the clusters found in "The Immune Landscape of Cancer".

immune_cells_analysis

immune_deconvolution_benchmark

Reproducible pipeline for "Comprehensive evaluation of cell-type quantification methods for immuno-oncology", Sturm et al. 2019, https://doi.org/10.1093/bioinformatics/btz363

immunedeconv

A unified interface to immune deconvolution methods (CIBERSORT, EPIC, quanTIseq, TIMER, xCell, MCPcounter)

immuneresistance

This resource provides the code developed in the study of Jerby-Arnon _et al. "Single-cell RNA-seq of melanoma ecosystems reveals sources of T cell exclusion linked to immunotherapy clinical outcomes".

immuno_notes

Immunology-related bioinformatics data and tools

immunology-informatics

Immunology Informatics - Big Data Analysis in Immunology - Tutorials

immunophenogram

immunorx_response_pipeline

impact-pipeline

Framework to process and call somatic variation from NGS dataset generated using MSK-IMPACT assay

impres-codes

imrep

ImReP is a computational method for rapid and accurate profiling of the adaptive immune repertoire from regular RNA-Seq data.

ims_gene_signature

Ratio of the interferon-γ signature to the immunosuppression signature predicts anti-PD-1 therapy response in melanoma

infercnv

Inferring CNV from Single-Cell RNA-Seq

intro-to-chipseq

Intro to ChIPseq using HPC

intro-to-rnaseq-hpc-salmon

iobr

IOBR is an R package to perform comprehensive analysis of tumor microenvironment and signatures for immuno-oncology.

ipsov

iptw

This R package calculates various measures of association and helps understand and visualize the link between causal models such as Marginal Structural Models and Standerdized measures.

irls

Machine learning-based integrative analysis develops an immune-derived lncRNA signature for improving clinical outcomes in colorectal cancer

jams_bw

Just a Microbiology System (JAMS) - a suite for analyzing microbiological sequencing data for use on NIH HPC systems (Biowulf)

jiang-lab

jianguozhouzunyimedicaluniversity