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bitacora

BITACORA: A Bioinformatics tool for gene family annotation

blast2ogmsa

Whole organelle genome-wide alignment construction method, which ultilizes BLAST tool, to facilitate phylogeny analysis

braker

BRAKER is a pipeline for fully automated prediction of protein coding gene structures with GeneMark-ES/ET and AUGUSTUS in novel eukaryotic genomes

bsa

Bulked-Segregant Analysis using vcf file with or without parents

bugbuilder

Hands-free microbial genome assembly

build

dockerfiles

calcfst

A small Soft that performs Fst scan based on Weir and Cockerham statistic

calculatetransks

A integrated toolkit for calculating Ks by transcriptome data sets.

cgview

CGView is a Java package for generating high-quality, zoomable maps of circular genomes.

cgview_comparison_tool

The CGView Comparison Tool (CCT) is a package for visually comparing bacterial, plasmid, chloroplast, and mitochondrial sequences.

chrvis

Visualize genes on chromesome

circleator

Flexible circular visualization of genome-associated data with BioPerl and SVG.

circos

learn circos

circos-pipeline

circos pipeline

circular-genome-visualizer

clustergrammer

An interactive heatmap visualization built using D3.js

cogclassifier

A tool for classifying prokaryote protein sequences into COG(Cluster of Orthologous Genes) functional category

comp_genomic

comparative genomics

compare-annotations

A script for comparing old vs new versions of genome annotations

comparetranscriptome

repository of scripts for comparative transcriptome analysis

convading

Copy Number Variation Detection In Next-generation sequencing Gene panels was designed for small (single-exon) copy number variation (CNV) detection in high coverage next-generation sequencing (NGS) data

corehunter3

Core Hunter 3: a flexible core subset selection tool

corset

Software for clustering de novo assembled transcripts and counting overlapping reads

crude-perl-scripts

This collection contains some of the scripts i wrote while working on the bioinformatics projects

csa2.6

Chromosome Scale Assembler: A high-throughput chromosome scale genome assembly pipeline for vertebrate genomes

csavanalysis

This analysis aims to detect convergent single amino acid variants among species from polyphyletic clades

data-visulization

issues for semina "Data Visulization"

data_analysis

基于Python的南京二手房数据采集及可视化分析

ddrad-seq-pipeline

ddradseqtools

Software package for in silico simulation and testing of double digest RADseq experiments.