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Name: jiangchb
Type: User
Name: jiangchb
Type: User
AB12PHYLO: An integrated easy-to-use pipeline for ML phylogenetic tree inference
ABC framework based on the distribution of segregationg sites between populations and Random Forest to perform model choice
[DEPRECATED] Summarizes the output of cross-validation values for multiple runs of admixture
AftrRAD is a bioinformatic pipeline for analyzing GBS data such as those generated with RADseq.
Another Gtf/Gff Analysis Toolkit
Prunes a given newick tree file to keep only taxa present in a given sequence alignment (FASTA format)
Calculate summary statistics and manipulate multiple sequence alignments
A workflow and toolkit of perl scripts to manipulate multiple sequence alignments
amplicon/smMIP mapping and analysis pipeline
Two modules to identify the SNPs and RNA Editing Sites of Chloroplast Genomes.
Analysis pipeline for processing paired-end Illumina reads obtained after ancient mtDNA target enrichment capture.
A tool for drawing ANI clustermap between all-vs-all microbial genomes using fastANI & seaborn
Annocript is a pipeline for the annotation of de-novo generated transcriptomes. It executes BLAST analysis with UniProt, NCBI Conserved Domain Database and Nucleotide divisions, Gene Ontology, UniPathways and the Enzyme Commission. It gives information about the longest ORF (using DNA2PEP) and non-coding potential of the sequences (using Portrait). A final heuristic makes Annocript able to identify putative long non-coding RNAs among your transcripts.
ANNOgesic is a bacterial transcriptome annotation pipeline based on RNA-Seq.
Cultivate your multiple sequence alignments to get better trees
Automatic RNA-Seq Pipelines with Interactive Report
A genome-scale, fast, and precise segmental duplications mapping tool
Improve the quality of a denovo assembly by scaffolding and gap filling
Run Assembly statistics on a genome assembly (BUSCO and assemblyStats and new_Assemblathon.pl)
A pipeline for processing a pyRAD .loci file by performing naive binning, running RAxML, and directing the output into ASTRAL
ATAC-seq peak-calling, QC and differential analysis pipeline
Plotting average TAD heatmap for Hi-C data (give TAD segmentation and cool/hiclib interactions map).
a lightweight bam file depth statistical tool
Paired reads mapping on de Bruijn graph
automatic annotation of bHLH gene family in plants
Scripts, notes and documents about the BIND annotation workflow (BIND: ab initio gene predictions by BRAKER combined with gene predictions INferred Directly from alignment of RNA-Seq evidence to the genome.)
My collection of light bioinformatics analysis pipelines for specific tasks
Various bioinformatics tools
A declarative, efficient, and flexible JavaScript library for building user interfaces.
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
An Open Source Machine Learning Framework for Everyone
The Web framework for perfectionists with deadlines.
A PHP framework for web artisans
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
Some thing interesting about web. New door for the world.
A server is a program made to process requests and deliver data to clients.
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
Some thing interesting about visualization, use data art
Some thing interesting about game, make everyone happy.
We are working to build community through open source technology. NB: members must have two-factor auth.
Open source projects and samples from Microsoft.
Google ❤️ Open Source for everyone.
Alibaba Open Source for everyone
Data-Driven Documents codes.
China tencent open source team.