jhuanglabtools Goto Github PK

go-admin

基于Gin + Vue + Element UI的前后端分离权限管理系统脚手架（包含了：基础用户管理功能，jwt鉴权，代码生成器，RBAC资源控制，表单构建等）分分钟构建自己的中后台项目；文档：http://doc.zhangwj.com/go-admin-site/ Demo： http://www.zhangwj.com/#/login

go-pinyin

汉字转拼音

gtc

The Genome Targeting Catalogue

gtc2vcf

Tools to convert Illumina IDAT/BPM/EGT/GTC and Affymetrix CEL/CHP files to VCF

hamlet

RNA-seq pipeline for AML diagnostics developed in collaboration with the LUMC Hematology department

harmony

Fast, sensitive and accurate integration of single-cell data with Harmony

hba-deals

HBA-DEALS

hic-bench

A set of pipelines for Hi-C and ChIP-Seq analysis.

igd

A high-performance search engine for large-scale genomic interval datasets

imap

iMAP v1.0 (Pre-release): Integrated Microbiome Analysis Pipeline

immunarch

🧬 Immunarch by ImmunoMind: R Package for Fast and Painless Exploration of Single-cell and Bulk T-cell/Antibody Immune Repertoires

infercna

Infer Copy Number Alterations and Clonality in (Single-Cell) RNA-Seq Data

italk

km

km : a software for RNA-seq investigation using k-mer decomposition

kraken2

The second version of the Kraken taxonomic sequence classification system

liftoff

An accurate GFF3/GTF lift over pipeline

maftools

Summarize, Analyze and Visualize MAF files from TCGA or in house studies.

metabolite-investigator

Shiny-Tool for investigation of metabolite-covariate relationships

microbiomeexplorer

The Microbiome Explorer provides methods to analyze and visualize microbial community sequencing data either from the R command line or through a Shiny application. Written by Janina Reeder and Joseph N. Paulson.

mlmetrics

Machine Learning Evaluation Metrics

mmcp-counter

Murine version of MCP-counter, a tool to estimate the immune and stromal composition of heterogeneous tissue, from transcriptomic data

mothur

Welcome to the mothur project, initiated by Dr. Patrick Schloss and his software development team in the Department of Microbiology & Immunology at The University of Michigan. This project seeks to develop a single piece of open-source, expandable software to fill the bioinformatics needs of the microbial ecology community.

multiclasspairs

Build single sample pair-based (rule-based) classifiers using top-score pairs or random forest for multi-class problems.

nichenetr

NicheNet: predict active ligand-target links between interacting cells

openpbta-analysis

The analysis repository for the Open Pediatric Brain Tumor Atlas Project

pagination

📖 A simple PHP lib: Pagination, without (database) dependencies

pascal

Performance ASsesment of Copy number alteration calling ALgorithms: pipeline that aims to assess the accuracy of commonly used algorithms for calling copy number alterations from Affymetrix SNP 6.0 array data.

php_background_process

Simple, elegant PHP background process solution for Windows and Linux

phpword

A pure PHP library for reading and writing word processing documents

phylophlan

Precise phylogenetic analysis of microbial isolates and genomes from metagenomes