Integration of O2 and CO2 measurements
Follow these steps to install the project correctly :
- Download the project here
- Open MATLAB
- Add the project to the path
- Download the m_map package here
- Download the maps
- Unzip the maps and put them in the folder m_map/private
- Add the m_map package to the MATLAB path
In order to run the program, you will need the following data :
- co2 data : .csv file (result of the concatCO2 program)
- tsg data : .tsgqc file
- o2 data : .oxy file
Once you add the project to path, you can run it from where you want using the following command :
>> interpCO2_TSG_O2If you know the full path to your files, you can run the command with them in parameter :
>> interpCO2_TSG_O2 path2co2 path2tsg path2o2The result of the program will be two different files :
- CO2 and TSG interpolation
- Previous interpolation and O2 interpolation
Then, you can visualize all the data :
- CO2 data
>> traceCO2- Interpolated O2 data
>> traceO2- CO2 and O2 concentration on maps
>> traceMapYou can also run interpolations separatly. However, you need the result file of the first concatenation to run interpCO2_O2 :
- interpTSG_CO2(co2File, tsgFile)
>> interpTSG_CO2- interpCO2_O2(tsg_co2InterpFile, o2File)
>> interpCO2_O2You can run all the tests from the project folder with
>> runtests('tests')This will test the following functions:
- readAsciiO2
- readInterpTSG_CO2
- interpCo2_O2
- correctO2Data
This file test the following functions
- readAsciiO2
- readInterpTSG_CO2
You can run all testFiles tests with :
>> runtests('TestFiles')or a specific test of the file :
>> runtests('TestFiles','ProcedureName','readCo2')the result is :
Running TFigureProperties
..
Done TFigureProperties
__________
Running TestFiles
Check if the tests files are found
../exemple/CSLO1902/cslo1902.oxy
../exemple/CSLO2001/cslo2001.oxy
../exemple/CSLO1902/cslo1902.csv
../exemple/CSLO2001/cslo2001.csv
../exemple/CSLO1902/cslo1902.bad
../exemple/CSLO2001/cslo2001.bad
.Check the number of lines read
.Check if we correctly read the data from o2 file
.Check if we correctly read the data from co2 file
.
Done TestFiles
__________
ans =
1×6 TestResult array with properties:
Name
Passed
Failed
Incomplete
Duration
Details
Totals:
6 Passed, 0 Failed, 0 Incomplete.
6.8135 seconds testing time.
TestInterpolation test the following function
- interpCo2_O2
Note that it's highly recommended to run the previous test before running this one as it use readinterpTSC_CO2 and readAsciiO2
>> runtests('testFiles')the result is :
Running TestInterpolation
Test with ../exemple/CSLO1902/cslo1902.oxy and ../exemple/CSLO1902/cslo1902.csv
Test with ../exemple/CSLO2001/cslo2001.oxy and ../exemple/CSLO2001/cslo2001.csv
.
Done TestInterpolation
__________
ans =
TestResult with properties:
Name: 'TestInterpolation/interpolationTest'
Passed: 1
Failed: 0
Incomplete: 0
Duration: 3.4632
Details: [1×1 struct]
Totals:
1 Passed, 0 Failed, 0 Incomplete.
3.4632 seconds testing time.
TestO2Compensation test the following function
- correctO2Data
Note that it's highly recommended to run the previous test before running this one as it use readinterpTSC_CO2 and readAsciiO2
>> runtests('TestO2Compensation')the results is :
>> runtests('testInterpolation')the result is :
Running TestO2Compensation
Computing scaled temperature ...
Computing solubility ...
Computing salinity compensation ...
Computing pressure compensation ...
Computing o2 concentration ...
Computing O2 Saturation ...
Writing data to structure ...
OXYGEN_RAW: [278 131.2700 131.6100 131.3500 132.1700 245.0700 244.9200 244.7700 245.1900 245.4000]
SSJT: [20 20.4110 20.4120 20.4270 20.4290 21.3920 21.4810 21.5640 21.5870 21.5770]
SSPS: [0 35 35 35 35 36.5160 36.6140 36.7160 36.7550 36.7590]
LICOR_P: [1.0133e+03 1.0195e+03 1.0194e+03 1.0192e+03 1.0191e+03 1.0140e+03 1.0141e+03 1.0141e+03 1.0143e+03 1.0141e+03]
OXYGEN_ADJ_muM: [278 106.8229 107.0997 106.8906 107.5582 197.9599 197.7528 197.5395 197.8405 198.0022]
OXYGEN_ADJ_MLL: [6.2311 2.3943 2.4005 2.3958 2.4108 4.4371 4.4324 4.4276 4.4344 4.4380]
OXYGEN_SATURATION: [6.9439 3.2662 3.2748 3.2690 3.2897 6.1303 6.1263 6.1220 6.1314 6.1377]
.
Done TestO2Compensation
__________
ans =
TestResult with properties:
Name: 'TestO2Compensation/compensationTest'
Passed: 1
Failed: 0
Incomplete: 0
Duration: 0.0739
Details: [1×1 struct]
Totals:
1 Passed, 0 Failed, 0 Incomplete.
0.073924 seconds testing time.
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