SAVIO SNOW - Example code for using SNOW on the UCB SAVIO cluster
I couldn't make Rmpi work on SAVIO, so I decided to use the snowslurm package from UMBC. This example is cribbed from the UMBC HPC documentation
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Download the latest version from github
git clone https://github.com/jeremyrcoyle/saviosnow.git
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Run the setup script to setup the right environment on SAVIO
cd saviosnow ./setup.sh
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Modify the example job -- change the e-mail address and working directory lines
emacs slurmjob.sh ```
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Submit the example job
sbatch slurmjob.sh ```
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See its running status
squeue -j [jobnumber] ```
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Check the output
less slurm.out less exsnowslurm.Rout ```