jeremymcrae / ld_estimator Goto Github PK

Hi

I got the same error on pip with two Windows machines:

ERROR: Command errored out with exit status 1:
command: 'c:\users\windows\anaconda3\python.exe' -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'C:\Users\Windows\AppData\Local\Temp\pip-install-0eemv2ot\pysam\setup.py'"'"'; file='"'"'C:\Users\Windows\AppData\Local\Temp\pip-install-0eemv2ot\pysam\setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(file);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, file, '"'"'exec'"'"'))' egg_info --egg-base 'C:\Users\Windows\AppData\Local\Temp\pip-pip-egg-info-90d2u7uw'
cwd: C:\Users\Windows\AppData\Local\Temp\pip-install-0eemv2ot\pysam
Complete output (23 lines):
# pysam: cython is available - using cythonize if necessary
# pysam: htslib mode is shared
# pysam: HTSLIB_CONFIGURE_OPTIONS=None
'.' is not recognized as an internal or external command,
operable program or batch file.
'.' is not recognized as an internal or external command,
operable program or batch file.
# pysam: htslib configure options: None
Traceback (most recent call last):
File "", line 1, in
File "C:\Users\Windows\AppData\Local\Temp\pip-install-0eemv2ot\pysam\setup.py", line 241, in
htslib_make_options = run_make_print_config()
File "C:\Users\Windows\AppData\Local\Temp\pip-install-0eemv2ot\pysam\setup.py", line 68, in run_make_print_config
stdout = subprocess.check_output(["make", "-s", "print-config"])
File "c:\users\windows\anaconda3\lib\subprocess.py", line 356, in check_output
**kwargs).stdout
File "c:\users\windows\anaconda3\lib\subprocess.py", line 423, in run
with Popen(*popenargs, **kwargs) as process:
File "c:\users\windows\anaconda3\lib\subprocess.py", line 729, in init
restore_signals, start_new_session)
File "c:\users\windows\anaconda3\lib\subprocess.py", line 1017, in _execute_child
startupinfo)
FileNotFoundError: [WinError 2] The system cannot find the file specified
----------------------------------------
ERROR: Command errored out with exit status 1: python setup.py egg_info Check the logs for full command output.