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defuse's Issues

Reference File defuse.cdna.fa Empty

The reference creation process breaks:
docker run -v /mnt/morris/defuse/:/data jeltje/defuse reference -c hg38config.txt
...
Input files DNA, FASTA:
/data/defuseData/defuse.cdna.fa
Reading reference sizes
Warning: Empty input file
Error: No unambiguous stretches of characters in the input. Aborting...

Looks like that file is in fact empty:

morris@galaxy-test1:~/confFuse$ ls -al /mnt/morris/defuse/defuseData/defuse.cdna.fa
-rw-r--r-- 1 morris morris 0 Sep 12 14:06 /mnt/morris/defuse/defuseData/defuse.cdna.fa

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