jeetsukumaran Goto Github PK

oo-cmake

pure cmake library for object oriented scripting

ot2020

Data exploration

pandoc-beamer-how-to

pandoc-dot-mermaid-luafilter

pdflatex-makefile

Simple Makefile for pdflatex-produced documents

phylogenetic_computing_with_dendropy

piikun

Species delimitation partition model space analysis and visualization.

pikun

An information theoretic toolkit for analysis and visualization of species delimitation model space.

platypus-phyloinformary

A collection of templates, classes, functions and other infrastructure for phylogenetic and evolutionary bioinformatics, computing and application development in C++.

plottree

A command line tool for quickly visualizing phylogenetic tree via a single command in terminal.

pomegranate

Graphical models for Python, implemented in Cython for speed.

popgeninfo

Vignettes for Population Genetics in R

possum

Multi-population molecular population genetic summary statistic calculation utility

probabilistic-programming-and-bayesian-methods-for-hackers

An introduction to Bayesian methods + probabilistic programming in data analysis with a computation/understanding-first, mathematics-second point of view. All in pure Python ;)

promptitude

A shell prompt with an attitude: enhanced (BASH) shell prompt with VCS (Git) branch and status information.

pstrudel

Calculates distances between unlabeled phylogenetic trees and alignments of different sizes.

pymc

Bayesian inference in Python

pyment

Format and convert Python docstrings and generates patches

pyseqgen

Wrapper around Seq-Gen molecular sequence generator

pystring

C++ functions matching the interface and behavior of python string methods with std::string

python-machine-learning-book-2nd-edition

The "Python Machine Learning (2nd edition)" book code repository and info resource

python-patterns

Source code behind the python-patterns.guide site by Brandon Rhodes

python-project-template

DO NOT FORK, CLICK ON "Use this template" - A github template to start a Python Project - this uses github actions to generate your project based on the template.

rangepp

Pythonic ranges for C++

resources-example

An example project demonstrating how to access data files in Python package

retrievious

revbayes

rich

Rich is a Python library for rich text and beautiful formatting in the terminal.

sample_taxa

#treeforall hackathon project exploring ways to sample species from within a taxon

sc-im

SC-IM - Spreadsheet Calculator Improvised -- An ncurses spreadsheet program for terminal