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jaleezyy avatar jaleezyy commented on May 27, 2024

Added our primer counting script to resources/dev_scripts/primer_finder.py.

from covid-19-signal.

fmaguire avatar fmaguire commented on May 27, 2024

Would grep -c -f $primer_file be a quick easy way to achieve the same core function as the script?

from covid-19-signal.

jaleezyy avatar jaleezyy commented on May 27, 2024

.........yes, yes it would. 😂

grep -c -f $rc_primer_file R1.fastq
grep -c -f $fw_primer_file R2.fastq

...would give what the script outputs as summary (for the old setup).

from covid-19-signal.

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