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Welcome to my GitHub page

I'm Jakob, a biologist-turned-programmer, happy in my role as a research software engineer.

I work as an assistant professor at CPR, Copenhagen University researching metagenomics with particular interest in virus- and plasmid metagenomics. Biologically, my interests are in phylogenetics, molecular evolution and sub-genomic replicons. On the computer science side, I'm a Julia, Rust and Python enthusiast, contributing to BioJulia and Julia. I particularly enjoy writing optimized and generic software packages for bioinformatics.

Highlighted work:

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Maintainer

Jakob Nybo Nissen's Projects

contributing icon contributing

Documentation, guidelines, and policy on contributing to all BioJulia repositories

coverm icon coverm

Read coverage calculator for metagenomics

csv.jl icon csv.jl

Utility library for working with CSV and other delimited files in the Julia programming language

dictionaries.jl icon dictionaries.jl

An alternative interface for dictionaries in Julia, for improved productivity and performance

fastx.jl icon fastx.jl

Parse and process FASTA and FASTQ formatted files of biological sequences.

formatspecimens.jl icon formatspecimens.jl

Biological file format specimens for testing packages, and functions to assist in testing.

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