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Welcome to my GitHub page

I'm Jakob, a biologist-turned-programmer, happy in my role as a research software engineer.

I work as an assistant professor at CPR, Copenhagen University researching metagenomics with particular interest in virus- and plasmid metagenomics. Biologically, my interests are in phylogenetics, molecular evolution and sub-genomic replicons. On the computer science side, I'm a Julia, Rust and Python enthusiast, contributing to BioJulia and Julia. I particularly enjoy writing optimized and generic software packages for bioinformatics.

Highlighted work:

Blogposts

Selected repositories

Maintainer

Jakob Nybo Nissen's Projects

about.jl icon about.jl

Mirror of https://code.tecosaur.net/tec/About.jl

alen icon alen

Simple terminal alignment viewer

aqua.jl icon aqua.jl

Auto QUality Assurance for Julia packages

automa.jl icon automa.jl

A julia code generator for regular expressions

badbio icon badbio

Convenience code for bioinformatics, written badly in Julia

biobag icon biobag

A collections of miscellaneous bioinformatics-related scripts

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