Data Files used in analyses for Understanding the Hidden Complexity of Latin American Population Isolates

There is a single file with all the counts used:
Results_SeatSeq_results_JzWholeGenome_v4_Aug17_AllSeqIndivs_Final
counts of NS, SYN, putatively neutral, and putatively deleterious sites annotated using SeattleSeq for each individual
column names correspond to the type of counting method for each variant annotation

There are two files in the folder containing ROH:
TrueROH_AllSeqIndivs_perIndivFINAL_Aug17.txt
Runs of homozygosity in N=449 sequenced individuals that remained after QC of data
TrueROH_Unrelated_perIndivFINAL_Aug17.txt
Runs of homozygosity in N=30 (per population) individuals that remained after QC of data

There are nine files and one script in the folder containing IBD segments:
The Rscript will run the permutation test for enrichment of IBD segments relative to the Finnish
IBD segments have extension: _allchroms_IBDSeq_FormattedRscript.out
Each file is split by population and contains the IBD segments output IBDSeq and used as input for IBDNe