Comments (1)
Add a --mito_assembly
(--mt_assembly
?) or concat the mitocondrial genome before running.
if (params.mito_assembly){
mito_ch = channel.of(params.mito_assembly, checkIfExists:true)
asm_ch = channel.fromPath(params.primary_assembly, checkIfExists:true) | combine(mito_ch) | addMito
} else {
asm_ch = channel.fromPath(params.primary_assembly, checkIfExists:true)
}
This is just a reminder to myself to add, after current run completes
from polishclr.
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from polishclr.