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ECG classification programs based on ML/DL methods

License: MIT License

Python 100.00%
ecg-classification mit-bh dataset electrode-voltage-measurements python cinc-challenge ecg deep-learning keras tensorflow cardio convolutional-neural-networks recurrent-neural-networks physiology physiological-signals heart-rate qrs neural-network bioinformatics chemoinformatics

deepecg's Introduction

DeepECG

ECG classification programs based on ML/DL methods. There are two datasets:

  • training2017.zip file contains one electrode voltage measurements taken as the difference between RA and LA electrodes with no ground. It is taken from The 2017 PhysioNet/CinC Challenge.
  • MIT-BH.zip file contains two electrode voltage measurements: MLII and V5.

Prerequisites:

  • Python 3.5 and higher
  • Keras framework with TensorFlow backend
  • Numpy, Scipy, Pandas libs
  • Scikit-learn framework

Instructions for running the program

  1. Execute the training2017.zip and MIT-BH.zip files into folders training2017/ and MIT-BH/ respectively
  2. If you want to use 2D Convolutional Neural Network for ECG classification then run the file CNN_ECG.py with the following commands:
  • If you want to train your model on the 2017 PhysioNet/CinC Challenge dataset:
python CNN_ECG.py cinc
  • If you want to train your model on the MIT-BH dataset:
python CNN_ECG.py mit
  1. If you want to use 1D Convolutional Neural Network for ECG classification then run the file Conv1D_ECG.py with the following commands:
python Conv1D_ECG.py

Additional info

Citation

If you use my repo - then, please, cite my paper. This is a BibTex citation:

@article{pyakillya_kazachenko_mikhailovsky_2017,
    author = {Boris Pyakillya, Natasha Kazachenko, Nick Mikhailovsky},
    title = {Deep Learning for ECG Classification},
    journal = {Journal of Physics: Conference Series},
    year = {2017},
    volume = {913},
    pages = {1-5},
    DOI={10.1088/1742-6596/913/1/012004},
    url = {http://iopscience.iop.org/article/10.1088/1742-6596/913/1/012004/pdf}
}

For feature extraction and hearbeat rate calculation:

deepecg's People

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busyyang avatar ismorphism avatar samir-nasibli avatar

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deepecg's Issues

some updates

This is a wonderful repo!

But the author of this repo seems to not update this for a long time. I guess he deprecated this. So I forked it and made some updates:

  • big refactoring
  • removing draft part
  • grouping reused methods
  • separating model architects
  • ....

Since the refactoring is big, so I did not create PR.

Feel free to visit and review my code, but cite the original paper from this authors' repo: https://github.com/Apollo1840/deepECG

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