iqbal-lab-org / ivcfmerge Goto Github PK

Add Travis build for this repo so that any commit push to this repo can be picked by Travis.

Batch merging currently process batches sequentially in order to maintain the ordering of samples in the original input. But in cases this is not necessary, batches can be processed in parallel to speed up the entire process.

When you run tests through pytest, there are quite a few warnings like this

tests/test_ivcfmerge_batch.py::test_merging_example_input /home/vagrant/.local/lib/python3.6/site-packages/hypothesis/extra/pytestplugin.py:168: HypothesisDeprecationWarning: tests/test_ivcfmerge_batch.py::test_merging_example_input uses the 'input_paths' fixture, but function-scoped fixtures should not be used with @given(...) tests, because fixtures are not reset between generated examples! since="2020-02-29",

Please resolve these warnings.